Os03g0838400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ammonium transporter.
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Os03g0838400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ammonium transporter.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 259.58 | 0.757 | 11.1 | 5.68 | 1.05 | -11.4 | 0.381 | 60.1 | 1.16 | 9.11 | 1000 | 365 | -- | -- |
| 267.95 | 0.768 | 11.4 | 3.75 | 1.06 | -1.39 | 0.365 | -- | 1.17 | 9.24 | 998.3 | 266 | -- | -- |
| 260.05 | 0.751 | 11.1 | 5.67 | 1.05 | -11.5 | -- | 60.5 | 1.17 | 9.09 | 1000 | 366 | -- | -- |
| 262.86 | 0.755 | 11.4 | 3.76 | 1.01 | -2.09 | -- | -- | 1.17 | 9.14 | 996.2 | 547 | -- | -- |
| 322.8 | 0.837 | 11.1 | 5.8 | -- | -11.6 | -- | 60.9 | 1.17 | -- | 1001 | 364 | -- | -- |
| 279.26 | 0.783 | 11.4 | 3.68 | 1.06 | -- | 0.378 | -- | 1.2 | 9.19 | -- | -- | -- | -- |
| 279.76 | 0.783 | 11.4 | 3.69 | 1.06 | -- | -- | -- | 1.2 | 9.17 | -- | -- | -- | -- |
| 321.31 | 0.835 | 11.5 | 3.76 | -- | -2.41 | -- | -- | 1.16 | -- | 995.9 | 576 | -- | -- |
| 631.77 | 1.17 | 11.5 | -- | 1.06 | -1.32 | -- | -- | 0.757 | 8.98 | 995.8 | 523 | -- | -- |
| 345.28 | 0.868 | 11.5 | 3.69 | -- | -- | -- | -- | 1.2 | -- | -- | -- | -- | -- |
| 638.74 | 1.18 | 11.5 | -- | 1.07 | -- | -- | -- | 0.787 | 8.91 | -- | -- | -- | -- |
| 690.8 | 1.22 | 11.6 | -- | -- | -1.92 | -- | -- | 0.77 | -- | 995.6 | 538 | -- | -- |
| 703.91 | 1.24 | 11.6 | -- | -- | -- | -- | -- | 0.794 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 244.71 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 10 | 246.38 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 13 | 246.54 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 21 | 246.97 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 42 | 247.36 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 45 | 247.44 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 75 | 247.54 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 90 | 247.59 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 197 | 249.57 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 207 | 250.13 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 248 | 251.69 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 289 | 253.16 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 20 | 8 |
| 314 | 253.65 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 7 |
| 377 | 254.38 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 384 | 254.46 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 385 | 254.46 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 18 |
| 387 | 254.49 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 411 | 254.67 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 20 | 18 |
| 448 | 254.89 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 467 | 255.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 496 | 255.15 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 22 | NA |
| 500 | 255.15 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 520 | 255.27 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 535 | 255.41 | wind | 9.0 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 545 | 255.44 | wind | 5.0 | 1440 | > th | dose independent | rect. | 24 | 14 |
| 553 | 255.48 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 568 | 255.58 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 22 | NA |
| 585 | 255.68 | wind | 5.0 | 1440 | < th | dose independent | rect. | 24 | 14 |
| 635 | 255.93 | wind | 5.0 | 1440 | > th | dose independent | rect. | 1 | 9 |
| 663 | 256.03 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 13 | 18 |
| 678 | 256.07 | wind | 5.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 680 | 256.07 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 1 | 9 |
| 745 | 256.27 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 9 |
| 751 | 256.30 | atmosphere | 1005.0 | 14400 | < th | dose independent | no | NA | NA |
| 766 | 256.32 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 769 | 256.33 | wind | 5.0 | 1440 | < th | dose independent | rect. | 1 | 9 |
| 806 | 256.42 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 807 | 256.43 | wind | 5.0 | 1440 | > th | dose independent | sin | 6 | NA |
| 809 | 256.43 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 826 | 256.50 | wind | 5.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 883 | 256.70 | wind | 5.0 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 889 | 256.72 | wind | 5.0 | 1440 | < th | dose independent | sin | 5 | NA |
| 896 | 256.74 | wind | 5.0 | 1440 | > th | dose independent | rect. | 7 | 4 |
| 916 | 256.80 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 922 | 256.82 | wind | 5.0 | 1440 | > th | dose dependent | sin | 7 | NA |
| 929 | 256.83 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 12 | 22 |
| 959 | 256.91 | atmosphere | 1005.0 | 14400 | > th | dose independent | no | NA | NA |
| 970 | 256.93 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 993 | 256.97 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 994 | 256.98 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 6 | 3 |