Os01g0831300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ammonium transporter.
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Os01g0831300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ammonium transporter.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 320.96 | 0.842 | 5.08 | -0.34 | 1.02 | -2.54 | -0.305 | 6.25 | 0.338 | 7.98 | 22 | 4069 | -- | -- |
| 343.78 | 0.864 | 5.32 | -0.542 | 1.01 | -4.68 | 0.371 | -- | 0.00511 | 7.44 | 18.7 | 9685 | -- | -- |
| 320.36 | 0.834 | 5.07 | -0.285 | 1.03 | -2.52 | -- | 6.47 | 0.393 | 7.94 | 22.2 | 4119 | -- | -- |
| 340.58 | 0.86 | 5.33 | -0.53 | 1.01 | -4.77 | -- | -- | -0.0609 | 8.02 | 18.71 | 9670 | -- | -- |
| 373.15 | 0.9 | 5.11 | -0.27 | -- | -2.54 | -- | 6.67 | 0.425 | -- | 22.5 | 3491 | -- | -- |
| 627.49 | 1.17 | 5.59 | -3.88 | 1.03 | -- | -0.441 | -- | -1.23 | 8.55 | -- | -- | -- | -- |
| 628.09 | 1.17 | 5.59 | -3.9 | 1.03 | -- | -- | -- | -1.23 | 8.46 | -- | -- | -- | -- |
| 395.53 | 0.926 | 5.36 | -0.522 | -- | -4.85 | -- | -- | -0.0468 | -- | 18.73 | 9531 | -- | -- |
| 344.26 | 0.864 | 5.31 | -- | 1.01 | -5.14 | -- | -- | 0.0639 | 7.92 | 18.8 | 9685 | -- | -- |
| 687.62 | 1.23 | 5.62 | -3.89 | -- | -- | -- | -- | -1.22 | -- | -- | -- | -- | -- |
| 1028.2 | 1.5 | 5.5 | -- | 1.02 | -- | -- | -- | -0.799 | 8.74 | -- | -- | -- | -- |
| 398.94 | 0.93 | 5.33 | -- | -- | -5.18 | -- | -- | 0.0743 | -- | 18.79 | 9621 | -- | -- |
| 1087.05 | 1.54 | 5.52 | -- | -- | -- | -- | -- | -0.791 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 311.23 | radiation | 30 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 2 | 311.33 | radiation | 30 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 3 | 311.46 | radiation | 30 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 6 | 311.90 | radiation | 30 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 15 | 312.88 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 16 | 313.49 | radiation | 10 | 43200 | < th | dose independent | rect. | 2 | 4 |
| 18 | 313.51 | radiation | 10 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 20 | 313.53 | radiation | 10 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 26 | 313.61 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 29 | 314.65 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 30 | 314.66 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 34 | 315.21 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 36 | 315.40 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 79 | 318.39 | temperature | 15 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 81 | 318.43 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 88 | 318.82 | temperature | 15 | 43200 | < th | dose independent | rect. | 22 | 6 |
| 96 | 319.34 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 18 |
| 97 | 319.38 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 15 |
| 100 | 319.45 | temperature | 15 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 115 | 319.64 | temperature | 15 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 116 | 319.65 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 6 |
| 127 | 319.82 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 209 | 320.75 | temperature | 15 | 43200 | < th | dose independent | sin | 12 | NA |
| 239 | 321.02 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 9 |
| 253 | 321.11 | radiation | 1 | 14400 | < th | dose dependent | sin | 9 | NA |
| 286 | 321.48 | temperature | 15 | 43200 | > th | dose independent | sin | 13 | NA |
| 323 | 321.73 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 388 | 322.13 | temperature | 15 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 406 | 322.27 | temperature | 15 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 446 | 322.51 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 459 | 322.60 | temperature | 15 | 43200 | > th | dose independent | rect. | 21 | 14 |
| 476 | 322.69 | temperature | 15 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 516 | 322.90 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 558 | 323.10 | radiation | 10 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 579 | 323.15 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 8 |
| 664 | 323.41 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 22 |
| 723 | 323.58 | temperature | 15 | 43200 | < th | dose independent | no | NA | NA |
| 740 | 323.69 | temperature | 15 | 43200 | > th | dose independent | no | NA | NA |
| 777 | 323.83 | temperature | 15 | 43200 | < th | dose independent | rect. | 5 | 23 |
| 805 | 324.00 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 884 | 324.50 | temperature | 15 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 924 | 324.74 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 2 |
| 935 | 324.87 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 939 | 324.90 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 4 |
| 950 | 325.00 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 961 | 325.07 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 977 | 325.11 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 1 |