BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0831300 Os01g0831300|AK109023
         (219 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38290.1  | chr2:16039672-16042291 REVERSE LENGTH=476          281   2e-76

>AT2G38290.1 | chr2:16039672-16042291 REVERSE LENGTH=476
          Length = 475

 Score =  281 bits (719), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 137/200 (68%), Positives = 160/200 (80%), Gaps = 11/200 (5%)

Query: 19  EWLNTGDNGWQLAAATFVGLQSMPGLVVLYGSIVKKKWAVNSAFMALYAYASTLIVWVLV 78
           EWLN GDN WQL AAT VGLQSMPGLV+LY SIVKKKWAVNSAFMALYA+A+ L+ WVL+
Sbjct: 14  EWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLLCWVLL 73

Query: 79  GFRMAFGDRLLPFWGKAGAALTEGFLVARASVPATAHYGKDGALESPRTEPFYPEASMVL 138
            ++MAFG+ LLPFWGK G A  +G+L  +A +P            S    P++P A++V 
Sbjct: 74  CYKMAFGEELLPFWGKGGPAFDQGYLKGQAKIP-----------NSNVAAPYFPMATLVY 122

Query: 139 FQFELAAITLVLLAGSLLGRMNIKAWMAFTPLWLLFSYTVCAFSLWGGGFLYQWGVIDYS 198
           FQF  AAIT +L+AGS+LGRMNIKAWMAF PLWL+FSYTV A+S+WGGGFLYQWGVIDYS
Sbjct: 123 FQFTFAAITTILVAGSVLGRMNIKAWMAFVPLWLIFSYTVGAYSIWGGGFLYQWGVIDYS 182

Query: 199 GGYVIHLSSGIAGFTAAYWV 218
           GGYVIHLSSG+AGF AAYWV
Sbjct: 183 GGYVIHLSSGVAGFVAAYWV 202



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.138    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,492,882
Number of extensions: 173188
Number of successful extensions: 429
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 2
Length of query: 219
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 124
Effective length of database: 8,502,049
Effective search space: 1054254076
Effective search space used: 1054254076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)