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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0831900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ammonium transporter.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.75 (0.0191) R2 : 0.00871
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0805 (0.0402) R2dN8 : 0.0112 R2N8 : 0.00871
σ : 0.36
deviance : 59.41
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.89 0.348 2.78 0.109 0.0796 2.3 0.0871 4.87 0.0953 21.6 16.9 607 -- --
58.35 0.356 2.74 0.165 0.0624 0.263 -0.0121 -- 0.126 20.2 21.47 1033 -- --
54.91 0.345 2.78 0.115 0.0766 2.39 -- 5.02 0.0942 22 16.84 717 -- --
58.28 0.356 2.74 0.188 0.0591 0.219 -- -- 0.146 22.9 23.5 2786 -- --
55.24 0.346 2.78 0.109 -- 2.8 -- 5.92 0.0943 -- 16.42 574 -- --
58.83 0.36 2.75 0.088 0.00186 -- -0.326 -- 0.0891 3.28 -- -- -- --
59 0.36 2.75 0.0944 0.0545 -- -- -- 0.0913 20.9 -- -- -- --
58.4 0.356 2.73 0.211 -- 0.245 -- -- 0.146 -- 22.2 3422 -- --
58.95 0.358 2.75 -- 0.0554 0.103 -- -- 0.0908 22 34.14 2729 -- --
59.17 0.359 2.75 0.0944 -- -- -- -- 0.091 -- -- -- -- --
59.24 0.36 2.75 -- 0.0544 -- -- -- 0.0808 21.1 -- -- -- --
59.12 0.358 2.74 -- -- 0.122 -- -- 0.0987 -- 42.14 1549 -- --
59.41 0.36 2.75 -- -- -- -- -- 0.0805 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 53.00 humidity 90.0 90 < th dose dependent rect. 2 2
3 53.04 humidity 90.0 90 < th dose independent rect. 3 1
11 53.28 humidity 90.0 10 < th dose dependent rect. 3 1
14 53.29 humidity 90.0 10 < th dose independent rect. 3 1
49 54.45 atmosphere 1005.0 10 > th dose dependent rect. 3 1
51 54.57 wind 1.0 10 < th dose independent rect. 17 5
57 54.83 wind 9.0 4320 > th dose independent rect. 3 1
73 54.83 temperature 20.0 1440 < th dose independent rect. 11 2
91 54.83 wind 9.0 4320 > th dose dependent rect. 3 1
107 54.83 temperature 20.0 1440 < th dose dependent rect. 12 2
128 54.87 wind 3.0 10 < th dose dependent rect. 22 1
129 54.88 temperature 20.0 1440 > th dose independent rect. 16 2
131 54.91 wind 1.0 10 < th dose dependent rect. 17 5
138 54.95 temperature 20.0 1440 < th dose independent rect. 12 6
140 54.95 wind 1.0 90 < th dose dependent rect. 21 1
141 54.96 temperature 20.0 1440 < th dose independent rect. 17 1
146 54.97 wind 1.0 10 < th dose dependent rect. 13 9
149 54.98 temperature 20.0 1440 > th dose independent rect. 12 6
155 55.01 wind 1.0 90 < th dose independent rect. 21 1
162 55.06 wind 1.0 10 < th dose independent rect. 21 1
164 55.06 temperature 20.0 1440 > th dose independent rect. 11 2
171 55.07 humidity 90.0 1440 > th dose independent rect. 12 1
174 55.08 humidity 90.0 1440 > th dose dependent rect. 12 1
199 55.16 wind 1.0 90 < th dose independent rect. 17 5
233 55.25 wind 1.0 270 < th dose dependent rect. 7 2
239 55.27 temperature 20.0 720 < th dose dependent rect. 7 1
242 55.30 humidity 90.0 1440 < th dose independent rect. 12 1
243 55.30 temperature 20.0 720 < th dose dependent rect. 7 5
252 55.34 temperature 20.0 720 < th dose dependent rect. 7 10
257 55.37 temperature 20.0 1440 < th dose dependent rect. 17 1
258 55.37 temperature 20.0 1440 < th dose dependent rect. 19 1
282 55.50 temperature 20.0 1440 < th dose dependent rect. 12 8
283 55.50 wind 1.0 270 < th dose dependent rect. 7 15
288 55.53 temperature 20.0 1440 < th dose dependent rect. 17 3
298 55.58 temperature 30.0 10 < th dose dependent rect. 22 1
302 55.63 temperature 20.0 10 < th dose dependent rect. 3 1
334 55.80 wind 9.0 14400 < th dose independent rect. 5 3
336 55.81 atmosphere 1005.0 90 > th dose independent rect. 21 2
339 55.82 wind 9.0 4320 < th dose independent rect. 4 1
347 55.85 temperature 20.0 720 < th dose independent rect. 7 10
353 55.86 wind 9.0 14400 < th dose independent rect. 24 8
355 55.86 humidity 70.0 10 > th dose dependent rect. 22 1
359 55.87 wind 1.0 270 < th dose independent rect. 7 1
360 55.87 humidity 80.0 10 > th dose independent rect. 22 1
363 55.88 temperature 20.0 10 > th dose independent rect. 22 1
372 55.91 precipitation 0.1 10 < th dose independent rect. 22 1
374 55.91 precipitation 0.1 10 < th dose dependent rect. 22 1
377 55.92 temperature 20.0 720 < th dose independent rect. 7 5
378 55.92 temperature 20.0 720 < th dose independent rect. 7 7
380 55.93 wind 1.0 10 > th dose independent rect. 22 1
382 55.93 temperature 20.0 720 > th dose independent rect. 7 9
401 55.97 temperature 10.0 10 > th dose independent rect. 22 1
403 55.97 temperature 30.0 10 < th dose independent rect. 22 1
404 55.97 humidity 50.0 10 > th dose independent rect. 22 1
407 55.97 atmosphere 995.0 10 > th dose independent rect. 22 1
408 55.97 atmosphere 1010.0 10 < th dose independent rect. 22 1
410 55.97 radiation 1.0 10 < th dose independent rect. 22 1
416 55.97 temperature 10.0 10 > th dose independent rect. 23 23
417 55.97 radiation 1.0 10 < th dose dependent rect. 22 1
424 55.99 atmosphere 1005.0 90 < th dose independent rect. 11 1
425 55.99 humidity 80.0 90 > th dose independent rect. 21 2
433 56.00 atmosphere 995.0 10 > th dose dependent rect. 22 1
438 56.01 atmosphere 1005.0 10 > th dose independent rect. 22 1
442 56.02 wind 9.0 14400 < th dose independent rect. 2 6
445 56.02 precipitation 0.1 90 < th dose independent rect. 23 22
449 56.02 precipitation 0.1 90 < th dose dependent rect. 23 22
476 56.05 atmosphere 1015.0 10 < th dose dependent rect. 22 1
484 56.05 temperature 20.0 1440 < th dose dependent rect. 7 16
492 56.07 temperature 20.0 720 < th dose independent rect. 7 1
505 56.10 wind 9.0 43200 > th dose independent rect. 4 1
521 56.12 temperature 20.0 90 < th dose independent rect. 2 1
524 56.12 wind 3.0 10 < th dose dependent rect. 12 1
538 56.13 radiation 30.0 90 < th dose independent rect. 23 21
539 56.13 temperature 10.0 10 > th dose dependent rect. 22 1
546 56.14 wind 1.0 270 < th dose independent rect. 17 1
548 56.14 wind 1.0 270 < th dose dependent rect. 17 1
549 56.14 temperature 20.0 1440 < th dose dependent rect. 22 1
551 56.14 wind 9.0 43200 > th dose dependent rect. 4 2
585 56.20 wind 9.0 10 < th dose independent rect. 23 23
587 56.20 atmosphere 995.0 90 > th dose dependent rect. 21 2
596 56.22 wind 9.0 4320 < th dose independent rect. 7 1
602 56.22 wind 3.0 270 < th dose independent rect. 7 15
606 56.23 atmosphere 1005.0 10 > th dose independent rect. 3 1
619 56.24 wind 1.0 1440 < th dose independent rect. 20 1
627 56.24 wind 9.0 270 < th dose dependent rect. 7 15
628 56.24 wind 3.0 30 < th dose dependent rect. 8 15
740 56.33 wind 5.0 4320 < th dose independent rect. 2 1
741 56.33 wind 9.0 43200 < th dose independent rect. 4 1
782 56.36 wind 1.0 1440 > th dose independent rect. 20 1
789 56.36 temperature 20.0 720 < th dose dependent rect. 24 1
790 56.36 radiation 30.0 14400 < th dose dependent rect. 23 1
797 56.36 wind 5.0 4320 > th dose dependent rect. 22 8
798 56.36 wind 9.0 14400 > th dose dependent rect. 22 8
805 56.37 wind 9.0 14400 > th dose independent rect. 24 8
812 56.37 radiation 1.0 43200 < th dose dependent rect. 21 1
830 56.39 wind 5.0 4320 > th dose independent rect. 2 1
834 56.39 wind 5.0 4320 < th dose independent rect. 1 3
840 56.39 wind 5.0 4320 > th dose dependent rect. 2 1
842 56.39 wind 9.0 14400 > th dose dependent rect. 24 6
861 56.40 wind 1.0 43200 < th dose dependent rect. 13 2
925 56.43 wind 5.0 4320 < th dose independent rect. 24 6
932 56.44 wind 3.0 43200 < th dose independent rect. 16 2
944 56.44 wind 5.0 4320 > th dose independent rect. 23 8
970 56.45 wind 1.0 4320 < th dose dependent rect. 15 1
980 56.45 wind 1.0 270 < th dose dependent rect. 7 12
985 56.46 humidity 90.0 30 < th dose independent rect. 22 1
986 56.46 wind 3.0 43200 > th dose independent rect. 16 2