Os02g0550800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ammonium transporter family protein.
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Os02g0550800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ammonium transporter family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 141.37 | 0.559 | 11.7 | 2.44 | 0.594 | -0.184 | 0.284 | 3.84 | 0.62 | 22.3 | 1001 | 12303 | -- | -- |
| 148.12 | 0.567 | 11.7 | 2.26 | 0.599 | 0.552 | 0.218 | -- | 0.674 | 22.1 | 999.3 | 11709 | -- | -- |
| 141.42 | 0.554 | 11.7 | 2.47 | 0.582 | -0.301 | -- | 4.38 | 0.607 | 22.3 | 1000 | 12018 | -- | -- |
| 148.19 | 0.567 | 11.7 | 2.25 | 0.599 | 0.557 | -- | -- | 0.664 | 22.4 | 999 | 11710 | -- | -- |
| 162.98 | 0.595 | 11.7 | 2.47 | -- | -0.312 | -- | 4.36 | 0.615 | -- | 1001 | 12345 | -- | -- |
| 155.52 | 0.585 | 11.7 | 2.37 | 0.604 | -- | 0.258 | -- | 0.615 | 22.3 | -- | -- | -- | -- |
| 155.78 | 0.584 | 11.7 | 2.36 | 0.602 | -- | -- | -- | 0.614 | 22.4 | -- | -- | -- | -- |
| 170.65 | 0.608 | 11.7 | 2.25 | -- | 0.555 | -- | -- | 0.669 | -- | 998.9 | 11449 | -- | -- |
| 273.91 | 0.771 | 11.7 | -- | 0.581 | 0.712 | -- | -- | 0.633 | 22.5 | 999.2 | 41325 | -- | -- |
| 177.92 | 0.623 | 11.7 | 2.37 | -- | -- | -- | -- | 0.616 | -- | -- | -- | -- | -- |
| 302.16 | 0.813 | 11.8 | -- | 0.617 | -- | -- | -- | 0.351 | 22.7 | -- | -- | -- | -- |
| 219.98 | 0.691 | 11.9 | -- | -- | 1.59 | -- | -- | -0.129 | -- | 1016 | 47076 | -- | -- |
| 325.66 | 0.842 | 11.8 | -- | -- | -- | -- | -- | 0.353 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 140.93 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 6 | 12 |
| 7 | 141.39 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 14 | 8 |
| 16 | 141.41 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 26 | 141.65 | atmosphere | 1005 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 52 | 141.83 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 8 | 14 |
| 54 | 141.84 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 10 | 12 |
| 64 | 141.88 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 10 |
| 73 | 141.90 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 117 | 142.01 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 125 | 142.03 | atmosphere | 1005 | 14400 | < th | dose dependent | sin | 12 | NA |
| 141 | 142.06 | atmosphere | 995 | 14400 | < th | dose independent | sin | 22 | NA |
| 199 | 142.15 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 248 | 142.22 | atmosphere | 995 | 14400 | > th | dose independent | sin | 22 | NA |
| 250 | 142.22 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 362 | 142.32 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 5 | 14 |
| 418 | 142.37 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 20 | 7 |
| 465 | 142.40 | atmosphere | 1005 | 14400 | < th | dose dependent | no | NA | NA |
| 515 | 142.43 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 2 | 7 |
| 529 | 142.44 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 9 | NA |
| 547 | 142.44 | atmosphere | 1005 | 14400 | < th | dose dependent | rect. | 1 | 23 |
| 550 | 142.45 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 9 | NA |
| 551 | 142.45 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 630 | 142.50 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 660 | 142.52 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 723 | 142.56 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 2 |
| 728 | 142.57 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 821 | 142.64 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 831 | 142.65 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 879 | 142.70 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 970 | 142.76 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 972 | 142.76 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 17 | 4 |