BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0719600 Os01g0719600|AK070988
(142 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0719600 Heavy metal transport/detoxification protein d... 260 3e-70
Os05g0534500 Phosphatidylinositol-specific phospholipase C,... 152 7e-38
Os03g0819400 Heavy metal transport/detoxification protein d... 85 1e-17
Os01g0976300 Heavy metal transport/detoxification protein d... 82 1e-16
Os08g0405700 Similar to Copper chaperone homolog CCH 80 4e-16
Os02g0530100 Heavy metal transport/detoxification protein d... 70 7e-13
Os08g0205400 Heavy metal transport/detoxification protein d... 64 3e-11
>Os01g0719600 Heavy metal transport/detoxification protein domain containing
protein
Length = 142
Score = 260 bits (664), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 130/142 (91%), Positives = 130/142 (91%)
Query: 1 MGRKLGFEKVLDCFSLALCTNACVCIHSVXXXXXXXXXXXXLVSSQLEELVKLKDLVGGA 60
MGRKLGFEKVLDCFSLALCTNACVCIHSV LVSSQLEELVKLKDLVGGA
Sbjct: 1 MGRKLGFEKVLDCFSLALCTNACVCIHSVEDDEEEAIEREALVSSQLEELVKLKDLVGGA 60
Query: 61 KTLAFHLEPKTVELRVSMHCYGCAKKVQKHISKMDGVTSFEVDLESKKVVVIGDITPYEV 120
KTLAFHLEPKTVELRVSMHCYGCAKKVQKHISKMDGVTSFEVDLESKKVVVIGDITPYEV
Sbjct: 61 KTLAFHLEPKTVELRVSMHCYGCAKKVQKHISKMDGVTSFEVDLESKKVVVIGDITPYEV 120
Query: 121 LASVSKVMKFAELWVAPNSQGC 142
LASVSKVMKFAELWVAPNSQGC
Sbjct: 121 LASVSKVMKFAELWVAPNSQGC 142
>Os05g0534500 Phosphatidylinositol-specific phospholipase C, X region domain
containing protein
Length = 160
Score = 152 bits (384), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 79/133 (59%), Positives = 100/133 (75%), Gaps = 8/133 (6%)
Query: 9 KVLDCFSLALC---TNACVCIHSVXXX--XXXXXXXXXLVSS--QLEELVKLKDLVGGAK 61
KVLDCFS ++C ++ C+C+ + LVSS Q++++++L+DLV G +
Sbjct: 14 KVLDCFSFSMCCARSSGCLCLRASEEDGDEEAAMERKSLVSSSSQVDQVIRLRDLVDGTR 73
Query: 62 TLAFHLEPKTVELRVSMHCYGCAKKVQKHISKMDGVTSFEVDLESKKVVVIGDITPYEVL 121
TL FHLEPKTVEL+VSMHC GCAKKVQKHIS+M+GVT FEVDLE KKVVV GD+TP EVL
Sbjct: 74 TLGFHLEPKTVELKVSMHCNGCAKKVQKHISRMEGVTWFEVDLEKKKVVVTGDVTPLEVL 133
Query: 122 ASVSKVMKFAELW 134
S+SKV KFA+LW
Sbjct: 134 QSISKV-KFAQLW 145
>Os03g0819400 Heavy metal transport/detoxification protein domain containing
protein
Length = 203
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Query: 70 KTVELRVSMHCYGCAKKVQKHISKMDGVTSFEVDLESKKVVVIGDITPYEVLASVSKVMK 129
+ V L+VS+HC CA KV+KH++KM+GVTSF +D +KKV V+GD+TP VL SVSKV K
Sbjct: 132 QVVVLKVSLHCKACAGKVKKHLAKMEGVTSFNIDFAAKKVTVVGDVTPLGVLNSVSKV-K 190
Query: 130 FAELWVAP 137
A+ W AP
Sbjct: 191 NAQFWAAP 198
>Os01g0976300 Heavy metal transport/detoxification protein domain containing
protein
Length = 204
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 72 VELRVSMHCYGCAKKVQKHISKMDGVTSFEVDLESKKVVVIGDITPYEVLASVSKVMKFA 131
V LRVS+HC GCA KV+KHISKM+GVTS ++D+ +KKV V+G +TP VL +VSK+ K A
Sbjct: 126 VVLRVSLHCKGCAGKVKKHISKMEGVTSLDIDIATKKVTVVGHVTPLSVLTAVSKI-KPA 184
Query: 132 ELW 134
+ W
Sbjct: 185 QFW 187
>Os08g0405700 Similar to Copper chaperone homolog CCH
Length = 205
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
Query: 70 KTVELRVSMHCYGCAKKVQKHISKMDGVTSFEVDLESKKVVVIGDITPYEVLASVSKVMK 129
+ V ++V++HC GCA KV+KHISKM+GVTSF +DLESKKV V+G ++P VL S+SKV K
Sbjct: 140 QVVVMKVAIHCQGCAGKVRKHISKMEGVTSFSIDLESKKVTVMGHVSPAGVLESISKVKK 199
Query: 130 FAEL 133
AEL
Sbjct: 200 -AEL 202
>Os02g0530100 Heavy metal transport/detoxification protein domain containing
protein
Length = 252
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 54 KDLVGGAKTLAFHLEPKTVELRVSMHCYGCAKKVQKHISKMDGVTSFEVDLESKKVVVIG 113
K + A T H+ KTV L+V M C GCA V++ ++KM+GV +F++D+E +KV V G
Sbjct: 108 KTVATSAPTRFLHVTTKTVVLKVGMSCQGCAGAVRRVLTKMEGVETFDIDMEQQKVTVKG 167
Query: 114 DITPYEVLASVSKVMKFAELW 134
++ P +V +VSK K W
Sbjct: 168 NVKPEDVFQTVSKTGKKTSFW 188
>Os08g0205400 Heavy metal transport/detoxification protein domain containing
protein
Length = 81
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 70 KTVELRVSMHCYGCAKKVQKHISKMDGVTSFEVDLESKKVVVIGDITPYEVLASVSKVMK 129
+TV LRV M C GC V++ + KM GV SF+VD++ +KV V G++TP VL +VSK K
Sbjct: 3 ETVVLRVGMSCEGCVGAVKRVLGKMQGVESFDVDIKEQKVTVKGNVTPDAVLQTVSKTGK 62
Query: 130 FAELWVA 136
W A
Sbjct: 63 KTSFWDA 69
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,902,037
Number of extensions: 113063
Number of successful extensions: 305
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 7
Length of query: 142
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 51
Effective length of database: 12,284,327
Effective search space: 626500677
Effective search space used: 626500677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)