BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0691100 Os01g0691100|AK064045
(103 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0691100 Similar to Lipid transfer protein (Fragment) 177 1e-45
Os10g0504900 Similar to Lipid transfer protein 84 3e-17
Os10g0504650 83 4e-17
Os10g0504700 83 4e-17
Os05g0550300 Similar to Lipid transfer protein (Fragment) 79 9e-16
Os10g0505500 Similar to Nonspecific lipid-transfer protein ... 75 7e-15
Os10g0505700 Similar to Nonspecific lipid-transfer protein ... 71 2e-13
Os05g0550600 Similar to Nonspecific lipid-transfer protein ... 70 2e-13
Os10g0505000 Plant lipid transfer/seed storage/trypsin-alph... 70 4e-13
Os11g0620300 Similar to Nonspecific lipid-transfer protein ... 69 8e-13
Os06g0705400 Similar to Nonspecific lipid-transfer protein ... 67 3e-12
>Os01g0691100 Similar to Lipid transfer protein (Fragment)
Length = 103
Score = 177 bits (450), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 92/103 (89%), Positives = 92/103 (89%)
Query: 1 MTMKPNEXXXXXXXXXXXTSPGTVCGASRTAPAAATKCDPLALRPCAAAILWGEAPSTAC 60
MTMKPNE TSPGTVCGASRTAPAAATKCDPLALRPCAAAILWGEAPSTAC
Sbjct: 1 MTMKPNEVLVLVLVLAVVTSPGTVCGASRTAPAAATKCDPLALRPCAAAILWGEAPSTAC 60
Query: 61 CAGLRAQKRCLCRYAKNPDLRKYINSQNSRKVAAACSVPAPRC 103
CAGLRAQKRCLCRYAKNPDLRKYINSQNSRKVAAACSVPAPRC
Sbjct: 61 CAGLRAQKRCLCRYAKNPDLRKYINSQNSRKVAAACSVPAPRC 103
>Os10g0504900 Similar to Lipid transfer protein
Length = 82
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 47/66 (71%)
Query: 38 CDPLALRPCAAAILWGEAPSTACCAGLRAQKRCLCRYAKNPDLRKYINSQNSRKVAAACS 97
CDP L PCAA I +G APS +CC+ L+AQ+ C C+YAK+P YINS N+RK+ AAC
Sbjct: 16 CDPGLLSPCAAPIFFGTAPSASCCSSLKAQQGCFCQYAKDPTYASYINSTNARKMIAACG 75
Query: 98 VPAPRC 103
+P P C
Sbjct: 76 IPFPNC 81
>Os10g0504650
Length = 100
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 47/66 (71%)
Query: 38 CDPLALRPCAAAILWGEAPSTACCAGLRAQKRCLCRYAKNPDLRKYINSQNSRKVAAACS 97
CDP L PCAA I +G APS +CC+ L+AQ+ C C+YAK+P YINS N+RK+ AAC
Sbjct: 34 CDPGLLSPCAAPIFFGTAPSASCCSSLKAQQGCFCQYAKDPTYASYINSTNARKMIAACG 93
Query: 98 VPAPRC 103
+P P C
Sbjct: 94 IPLPNC 99
>Os10g0504700
Length = 100
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 48/67 (71%)
Query: 37 KCDPLALRPCAAAILWGEAPSTACCAGLRAQKRCLCRYAKNPDLRKYINSQNSRKVAAAC 96
+CDP L PCAA I +G APS +CC+ L+AQ+ C C+YAK+P YINS N+RK+ AAC
Sbjct: 33 QCDPGLLSPCAAPIFFGTAPSASCCSSLKAQQGCFCQYAKDPMYASYINSTNARKMIAAC 92
Query: 97 SVPAPRC 103
+P P C
Sbjct: 93 GIPLPNC 99
>Os05g0550300 Similar to Lipid transfer protein (Fragment)
Length = 94
Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 50/66 (75%)
Query: 38 CDPLALRPCAAAILWGEAPSTACCAGLRAQKRCLCRYAKNPDLRKYINSQNSRKVAAACS 97
CD L L PCA+AI+ +PS +CC+ ++ Q+ CLC+YA++P+L++Y+NS N +KV AAC
Sbjct: 29 CDALQLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACH 88
Query: 98 VPAPRC 103
VP P C
Sbjct: 89 VPVPSC 94
>Os10g0505500 Similar to Nonspecific lipid-transfer protein 2G (LTP2G) (Lipid
transfer protein 2 isoform 1) (LTP2-1) (7 kDa lipid
transfer protein 1)
Length = 94
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 37 KCDPLALRPCAAAILWGEAPSTACCAGLRAQKR--CLCRYAKNPDLRKYINSQNSRKVAA 94
+CDP L C + I +G APS +CC+ LRAQ++ CLC+YAK+P Y+N+ N+RK A
Sbjct: 26 QCDPEQLSACVSPIFYGTAPSESCCSNLRAQQKEGCLCQYAKDPTYASYVNNTNARKTIA 85
Query: 95 ACSVPAPRC 103
AC +P P C
Sbjct: 86 ACGIPIPSC 94
>Os10g0505700 Similar to Nonspecific lipid-transfer protein 2 (nsLTP2) (7 kDa
lipid transfer protein)
Length = 91
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 37 KCDPLALRPCAAAILWGEAPSTACCAGLRAQKRCLCRYAKNPDLRKYINSQNSRKVAAAC 96
+C+ L CA AI+ G PS +CC+ LRAQ+ C C+YA+NP YINS N+RK +C
Sbjct: 25 QCNAGQLAICAGAIIGGSTPSASCCSNLRAQRGCFCQYARNPAYASYINSANARKTLTSC 84
Query: 97 SVPAPRC 103
+ PRC
Sbjct: 85 GIAIPRC 91
>Os05g0550600 Similar to Nonspecific lipid-transfer protein 2 (nsLTP2) (7 kDa
lipid transfer protein)
Length = 96
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 38 CDPLALRPCAAAILWGEAPSTACCAGLRAQK-RCLCRYAKNPDLRKYINSQNSRKVAAAC 96
C P L PCA AI+ P+ ACC L+A C C+Y K+P+++KY+NS N +KV A C
Sbjct: 30 CTPTQLTPCAPAIVGNSPPTAACCGKLKAHPASCFCQYKKDPNMKKYVNSPNGKKVFATC 89
Query: 97 SVPAPRC 103
VP P+C
Sbjct: 90 KVPLPKC 96
>Os10g0505000 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
domain containing protein
Length = 100
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 37 KCDPLALRPCAAAILWGEAPSTACCAGLRAQKR--CLCRYAKNPDLRKYINSQNSRKVAA 94
+CDP L CA I +G APS +CC+ LRAQ++ C C+YA++P YINS N+R A
Sbjct: 32 QCDPGKLSACAVPIFFGTAPSKSCCSNLRAQEKDGCFCQYARDPMYASYINSTNARNTIA 91
Query: 95 ACSVPAPRC 103
AC + P C
Sbjct: 92 ACGIAFPSC 100
>Os11g0620300 Similar to Nonspecific lipid-transfer protein 2 (LTP 2)
Length = 110
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%)
Query: 26 GASRTAPAAATKCDPLALRPCAAAILWGEAPSTACCAGLRAQKRCLCRYAKNPDLRKYIN 85
G A ++C+P L PCA L+G ACCA LRAQ CLC YA++P+ YI
Sbjct: 32 GVVEAAVVPPSRCNPTLLTPCAGPALFGGPVPPACCAQLRAQAACLCAYARSPNYGSYIR 91
Query: 86 SQNSRKVAAACSVPAPRC 103
S N+R++ A C +P P+C
Sbjct: 92 SPNARRLFAVCGLPMPQC 109
>Os06g0705400 Similar to Nonspecific lipid-transfer protein 2P (LTP2P) (Lipid
transfer protein 2 isoform 2) (LTP2-2) (7 kDa lipid
transfer protein 2)
Length = 94
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 38 CDPLALRPCAAAILWGEAPSTACCAGLRAQKRCLCRYAKNPDLRKYINSQNSRKVAAACS 97
C+P AL PC +AI+ G APS CC LRAQ+ CLC+YA++P R Y+ S ++++ AC+
Sbjct: 30 CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACN 89
Query: 98 VPA 100
V A
Sbjct: 90 VKA 92
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.128 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,626,759
Number of extensions: 135753
Number of successful extensions: 458
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 13
Length of query: 103
Length of database: 17,035,801
Length adjustment: 71
Effective length of query: 32
Effective length of database: 13,328,607
Effective search space: 426515424
Effective search space used: 426515424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)