BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0635200 Os01g0635200|AK112054
(85 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0635200 Homeodomain-like containing protein 177 1e-45
Os05g0579600 Homeodomain-like containing protein 108 8e-25
Os05g0579700 102 8e-23
Os01g0635000 84 3e-17
Os02g0706400 Similar to RADIALIS 80 3e-16
Os12g0522900 77 3e-15
Os07g0443500 Myb, DNA-binding domain containing protein 75 1e-14
Os05g0567600 74 3e-14
Os03g0252900 70 3e-13
Os05g0449900 Homeodomain-like containing protein 65 1e-11
Os01g0142500 Homeodomain-like containing protein 63 5e-11
Os04g0676700 Similar to MCB1 protein 62 8e-11
>Os01g0635200 Homeodomain-like containing protein
Length = 85
Score = 177 bits (450), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MASMSVSSSRAPQWTARQNEQFERALAVYDRDTPERWHNIARAVAGKSADEVKLYYDLLV 60
MASMSVSSSRAPQWTARQNEQFERALAVYDRDTPERWHNIARAVAGKSADEVKLYYDLLV
Sbjct: 1 MASMSVSSSRAPQWTARQNEQFERALAVYDRDTPERWHNIARAVAGKSADEVKLYYDLLV 60
Query: 61 EDVKRIETGKVPFPAYRCPQPAIAG 85
EDVKRIETGKVPFPAYRCPQPAIAG
Sbjct: 61 EDVKRIETGKVPFPAYRCPQPAIAG 85
>Os05g0579600 Homeodomain-like containing protein
Length = 90
Score = 108 bits (270), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 49/71 (69%), Positives = 61/71 (85%), Gaps = 1/71 (1%)
Query: 13 QWTARQNEQFERALAVYDRDTPERWHNIARAVAG-KSADEVKLYYDLLVEDVKRIETGKV 71
QW +QN+ FE+ALAVYD++TP+RWHNIARAV G KSA++VK YY++L ED+K IE+GKV
Sbjct: 8 QWPQKQNKLFEQALAVYDKETPDRWHNIARAVGGGKSAEDVKRYYEMLEEDIKHIESGKV 67
Query: 72 PFPAYRCPQPA 82
PFPAYRCP A
Sbjct: 68 PFPAYRCPAAA 78
>Os05g0579700
Length = 111
Score = 102 bits (253), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 62/79 (78%), Gaps = 4/79 (5%)
Query: 2 ASMSVSSSRAPQ---WTARQNEQFERALAVYDRDTPERWHNIARAVAG-KSADEVKLYYD 57
A MS+ SSR WT RQN+QFE ALAVYD++TP+RWHNIAR + G KSADEV+ ++D
Sbjct: 12 AMMSLPSSRGGGGGGWTQRQNKQFECALAVYDKETPDRWHNIARYMGGAKSADEVRRHFD 71
Query: 58 LLVEDVKRIETGKVPFPAY 76
LVEDV RIE+G+VPFP Y
Sbjct: 72 HLVEDVSRIESGRVPFPRY 90
>Os01g0635000
Length = 93
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Query: 13 QWTARQNEQFERALAVYDRDTPERWHNIARAVAG-KSADEVKLYYDLLVEDVKRIETGKV 71
+WT +QN+QFERALAVYD D P+RWHN+AR + G KSA+EV+ +Y+ L DV++IE G V
Sbjct: 19 EWTKQQNKQFERALAVYDTDAPDRWHNVARYMGGAKSAEEVRRHYERLQADVEQIEAGGV 78
Query: 72 PF 73
PF
Sbjct: 79 PF 80
>Os02g0706400 Similar to RADIALIS
Length = 101
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 48/59 (81%), Gaps = 1/59 (1%)
Query: 11 APQWTARQNEQFERALAVYDRDTPERWHNIARAV-AGKSADEVKLYYDLLVEDVKRIET 68
+ WT +QN+ FERALA+YDRDTP+RW N+ARAV GKS D+VK +Y+ L++DV RI++
Sbjct: 2 SSSWTTKQNKVFERALAIYDRDTPDRWQNVARAVGGGKSVDDVKRHYEKLIKDVDRIDS 60
>Os12g0522900
Length = 109
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Query: 14 WTARQNEQFERALAVYDRDTPERWHNIARAV-AGKSADEVKLYYDLLVEDVKRIET 68
WT +QN+ FERALA YD+DTP RW N+ARAV GK+A+EVK +YD L++D+ IE+
Sbjct: 5 WTTKQNKLFERALATYDKDTPGRWQNVARAVGGGKTAEEVKRHYDKLLQDLHHIES 60
>Os07g0443500 Myb, DNA-binding domain containing protein
Length = 75
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 11 APQWTARQNEQFERALAVYDRDTPERWHNIARAVAG-KSADEVKLYYDLLVEDVKRIETG 69
A +W+ +N+ FE+A+A Y P+ WH ++RA+ G K+ADEV+L++++LV+D+K IE
Sbjct: 2 ASEWSKEENKLFEQAIAYYGEGAPDLWHKVSRAMGGTKTADEVRLHFEILVDDIKLIEAR 61
Query: 70 KVPFPAYRC 78
+VPFP Y
Sbjct: 62 RVPFPKYNT 70
>Os05g0567600
Length = 85
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 13 QWTARQNEQFERALAVYDRDTPERWHNIARAVAG-KSADEVKLYYDLLVEDVKRIETGKV 71
+W+ ++N+ FE ALA Y DTP RW +A A+ G KSA+E++ +Y+ L +DVK IE+G+V
Sbjct: 14 EWSRKENKMFEEALAYYGEDTPNRWDKVASAMGGIKSAEEIRCHYEDLTDDVKTIESGRV 73
Query: 72 PFPAYR 77
FP Y+
Sbjct: 74 QFPKYK 79
>Os03g0252900
Length = 102
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 14 WTARQNEQFERALAVYDRDTPERWHNIARAV-AGKSADEVKLYYDLLVEDVKRIETGKVP 72
W+ +N +FE+ALA+YDRDTP RW +A V GK+AD+V+ ++DLLV+D IE+G
Sbjct: 3 WSRAENARFEQALAMYDRDTPGRWERVAAVVGGGKTADDVRRHFDLLVDDCGSIESGNYG 62
Query: 73 FP 74
+P
Sbjct: 63 YP 64
>Os05g0449900 Homeodomain-like containing protein
Length = 315
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 14 WTARQNEQFERALAVYDRDTPERWHNIARAVAGKSADEVKLYYDLLVEDVKRIETGKVPF 73
W+ +N+ FE+ALA DR+ PERW +A + GK+ +V +YD L DV IE G VPF
Sbjct: 40 WSQEENKVFEQALAALDRNDPERWERVALLLPGKTVADVMTHYDDLENDVCFIEAGLVPF 99
Query: 74 PAY 76
P Y
Sbjct: 100 PHY 102
>Os01g0142500 Homeodomain-like containing protein
Length = 294
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 11 APQWTARQNEQFERALAVYDRDTPERWHNIARAVAGKSADEVKLYYDLLVEDVKRIETGK 70
A +W+ +N+QFERALA D P+ W +ARA+ G+SA EV ++ L DV++IE G
Sbjct: 26 ARKWSPEENKQFERALAGLDLRCPD-WDRVARAIPGRSALEVMNHFRDLELDVQQIENGM 84
Query: 71 VPFPAY 76
VPFP Y
Sbjct: 85 VPFPVY 90
>Os04g0676700 Similar to MCB1 protein
Length = 318
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 14 WTARQNEQFERALAVYDRDTPER---WHNIARAVAGKSADEVKLYYDLLVEDVKRIETGK 70
WT + + FE ALA D E W +A AV GK+ADEV+ +Y+LLVEDV IE G+
Sbjct: 33 WTREREKAFENALATVGDDEEEGDGLWEKLAEAVEGKTADEVRRHYELLVEDVDGIEAGR 92
Query: 71 VPFPAY 76
VP Y
Sbjct: 93 VPLLVY 98
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.129 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,954,184
Number of extensions: 101175
Number of successful extensions: 417
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 409
Number of HSP's successfully gapped: 12
Length of query: 85
Length of database: 17,035,801
Length adjustment: 55
Effective length of query: 30
Effective length of database: 14,164,031
Effective search space: 424920930
Effective search space used: 424920930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)