Os02g0706400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RADIALIS.
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Os02g0706400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RADIALIS.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.54 | 0.507 | 12.6 | -1.92 | 1.57 | -3.52 | -0.0111 | -4.83 | -0.364 | 10.6 | 0.8405 | 1448 | -- | -- |
| 122.03 | 0.514 | 12.7 | -2.28 | 1.48 | -2.53 | 0.208 | -- | -0.439 | 10.6 | 2.201 | 1462 | -- | -- |
| 116.51 | 0.503 | 12.6 | -1.92 | 1.57 | -3.49 | -- | -4.77 | -0.361 | 10.7 | 0.7965 | 1447 | -- | -- |
| 120.74 | 0.512 | 12.7 | -2.29 | 1.21 | -2.75 | -- | -- | -0.474 | 10 | 2.38 | 1510 | -- | -- |
| 176.19 | 0.618 | 12.8 | -2.23 | -- | -3.93 | -- | -1.96 | -0.507 | -- | 1.98 | 1566 | -- | -- |
| 195.13 | 0.655 | 12.6 | -1.8 | 1.63 | -- | -0.168 | -- | -0.111 | 10.6 | -- | -- | -- | -- |
| 195.25 | 0.654 | 12.6 | -1.8 | 1.63 | -- | -- | -- | -0.111 | 10.6 | -- | -- | -- | -- |
| 178.24 | 0.622 | 12.8 | -2.39 | -- | -3.67 | -- | -- | -0.564 | -- | 2.384 | 1575 | -- | -- |
| 239.61 | 0.721 | 12.7 | -- | 1.28 | -1.59 | -- | -- | -0.172 | 10 | 8.065 | 1565 | -- | -- |
| 359.18 | 0.886 | 12.7 | -1.83 | -- | -- | -- | -- | -0.119 | -- | -- | -- | -- | -- |
| 280.87 | 0.784 | 12.6 | -- | 1.64 | -- | -- | -- | 0.0896 | 10.7 | -- | -- | -- | -- |
| 286.6 | 0.791 | 12.7 | -- | -- | -1.25 | -- | -- | 0.03 | -- | 5.165 | 1613 | -- | -- |
| 447.76 | 0.988 | 12.6 | -- | -- | -- | -- | -- | 0.0844 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 111.96 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 4 | 112.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 8 | 112.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 16 |
| 20 | 113.35 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 25 | 113.54 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 28 | 113.66 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 36 | 113.94 | radiation | 1 | 1440 | < th | dose dependent | sin | 14 | NA |
| 39 | 114.20 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 40 | 114.21 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 45 | 114.31 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 14 |
| 49 | 114.39 | temperature | 20 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 51 | 114.42 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 53 | 114.47 | temperature | 15 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 54 | 114.49 | temperature | 20 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 56 | 114.50 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 68 | 114.61 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 69 | 114.61 | temperature | 15 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 72 | 114.63 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 80 | 114.68 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 83 | 114.68 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 91 | 114.71 | temperature | 20 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 93 | 114.72 | radiation | 1 | 43200 | > th | dose independent | sin | 13 | NA |
| 108 | 114.77 | temperature | 20 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 117 | 114.79 | temperature | 20 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 121 | 114.81 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 7 |
| 150 | 114.86 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 157 | 114.87 | temperature | 15 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 164 | 114.89 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 6 |
| 180 | 114.90 | temperature | 25 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 233 | 114.95 | radiation | 1 | 43200 | < th | dose independent | sin | 14 | NA |
| 244 | 114.96 | radiation | 1 | 43200 | < th | dose independent | sin | 17 | NA |
| 259 | 114.96 | temperature | 15 | 43200 | > th | dose dependent | sin | 12 | NA |
| 271 | 114.97 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 272 | 114.97 | temperature | 20 | 43200 | > th | dose independent | rect. | 12 | 13 |
| 305 | 115.00 | temperature | 25 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 307 | 115.00 | temperature | 25 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 348 | 115.03 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 11 |
| 359 | 115.04 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 368 | 115.04 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 15 |
| 376 | 115.05 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 386 | 115.06 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 14 |
| 457 | 115.09 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 12 |
| 471 | 115.10 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 10 |
| 478 | 115.10 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 542 | 115.13 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 547 | 115.14 | radiation | 1 | 43200 | > th | dose independent | no | NA | NA |
| 678 | 115.16 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 694 | 115.17 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |
| 719 | 115.18 | temperature | 25 | 43200 | < th | dose independent | rect. | 14 | 6 |
| 736 | 115.19 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 11 |
| 739 | 115.19 | temperature | 20 | 43200 | < th | dose independent | rect. | 12 | 13 |
| 760 | 115.20 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 835 | 115.25 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 897 | 115.27 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 7 |
| 916 | 115.28 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 918 | 115.28 | radiation | 1 | 43200 | < th | dose dependent | rect. | 14 | 5 |
| 931 | 115.29 | temperature | 20 | 43200 | > th | dose independent | sin | 17 | NA |
| 946 | 115.30 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 973 | 115.31 | temperature | 15 | 43200 | > th | dose dependent | no | NA | NA |
| 981 | 115.31 | temperature | 15 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 992 | 115.32 | temperature | 15 | 43200 | > th | dose dependent | rect. | 1 | 23 |