BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0706400 Os02g0706400|AK121386
(101 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0706400 Similar to RADIALIS 158 8e-40
Os12g0522900 104 1e-23
Os05g0579600 Homeodomain-like containing protein 89 7e-19
Os01g0635000 84 2e-17
Os05g0579700 84 3e-17
Os01g0635200 Homeodomain-like containing protein 80 3e-16
Os03g0855900 77 3e-15
Os03g0252900 73 4e-14
Os05g0567600 68 2e-12
Os07g0443500 Myb, DNA-binding domain containing protein 67 3e-12
>Os02g0706400 Similar to RADIALIS
Length = 101
Score = 158 bits (400), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/101 (79%), Positives = 80/101 (79%)
Query: 1 MSSSWTTKQNKVFERALAIYDRDTPDRWQNVARAVGGGKSVDDVKRHYEKLIKDVDRIDS 60
MSSSWTTKQNKVFERALAIYDRDTPDRWQNVARAVGGGKSVDDVKRHYEKLIKDVDRIDS
Sbjct: 1 MSSSWTTKQNKVFERALAIYDRDTPDRWQNVARAVGGGKSVDDVKRHYEKLIKDVDRIDS 60
Query: 61 TGGHQGSHYXXXXXXXXXXXXXXXXXXXXXEDQRRRYHNFQ 101
TGGHQGSHY EDQRRRYHNFQ
Sbjct: 61 TGGHQGSHYNSSNASSSSSSSSSNSRGSANEDQRRRYHNFQ 101
>Os12g0522900
Length = 109
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 46/62 (74%), Positives = 56/62 (90%)
Query: 1 MSSSWTTKQNKVFERALAIYDRDTPDRWQNVARAVGGGKSVDDVKRHYEKLIKDVDRIDS 60
MSSSWTTKQNK+FERALA YD+DTP RWQNVARAVGGGK+ ++VKRHY+KL++D+ I+S
Sbjct: 1 MSSSWTTKQNKLFERALATYDKDTPGRWQNVARAVGGGKTAEEVKRHYDKLLQDLHHIES 60
Query: 61 TG 62
G
Sbjct: 61 AG 62
>Os05g0579600 Homeodomain-like containing protein
Length = 90
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 49/58 (84%)
Query: 3 SSWTTKQNKVFERALAIYDRDTPDRWQNVARAVGGGKSVDDVKRHYEKLIKDVDRIDS 60
+ W KQNK+FE+ALA+YD++TPDRW N+ARAVGGGKS +DVKR+YE L +D+ I+S
Sbjct: 7 AQWPQKQNKLFEQALAVYDKETPDRWHNIARAVGGGKSAEDVKRYYEMLEEDIKHIES 64
>Os01g0635000
Length = 93
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 47/58 (81%)
Query: 5 WTTKQNKVFERALAIYDRDTPDRWQNVARAVGGGKSVDDVKRHYEKLIKDVDRIDSTG 62
WT +QNK FERALA+YD D PDRW NVAR +GG KS ++V+RHYE+L DV++I++ G
Sbjct: 20 WTKQQNKQFERALAVYDTDAPDRWHNVARYMGGAKSAEEVRRHYERLQADVEQIEAGG 77
>Os05g0579700
Length = 111
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 47/56 (83%)
Query: 5 WTTKQNKVFERALAIYDRDTPDRWQNVARAVGGGKSVDDVKRHYEKLIKDVDRIDS 60
WT +QNK FE ALA+YD++TPDRW N+AR +GG KS D+V+RH++ L++DV RI+S
Sbjct: 27 WTQRQNKQFECALAVYDKETPDRWHNIARYMGGAKSADEVRRHFDHLVEDVSRIES 82
>Os01g0635200 Homeodomain-like containing protein
Length = 85
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 48/59 (81%), Gaps = 1/59 (1%)
Query: 2 SSSWTTKQNKVFERALAIYDRDTPDRWQNVARAVGGGKSVDDVKRHYEKLIKDVDRIDS 60
+ WT +QN+ FERALA+YDRDTP+RW N+ARAV GKS D+VK +Y+ L++DV RI++
Sbjct: 11 APQWTARQNEQFERALAVYDRDTPERWHNIARAV-AGKSADEVKLYYDLLVEDVKRIET 68
>Os03g0855900
Length = 87
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 45/66 (68%)
Query: 1 MSSSWTTKQNKVFERALAIYDRDTPDRWQNVARAVGGGKSVDDVKRHYEKLIKDVDRIDS 60
M++SW+ +N FE+ALA YD D P+RW+ +A AVGGGK+ DDV+RHY+ L DV ID
Sbjct: 1 MAASWSESENARFEQALATYDSDNPNRWELIATAVGGGKTADDVRRHYDHLQHDVTTIDD 60
Query: 61 TGGHQG 66
H
Sbjct: 61 DHSHAA 66
>Os03g0252900
Length = 102
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 42/56 (75%)
Query: 5 WTTKQNKVFERALAIYDRDTPDRWQNVARAVGGGKSVDDVKRHYEKLIKDVDRIDS 60
W+ +N FE+ALA+YDRDTP RW+ VA VGGGK+ DDV+RH++ L+ D I+S
Sbjct: 3 WSRAENARFEQALAMYDRDTPGRWERVAAVVGGGKTADDVRRHFDLLVDDCGSIES 58
>Os05g0567600
Length = 85
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 40/56 (71%)
Query: 5 WTTKQNKVFERALAIYDRDTPDRWQNVARAVGGGKSVDDVKRHYEKLIKDVDRIDS 60
W+ K+NK+FE ALA Y DTP+RW VA A+GG KS ++++ HYE L DV I+S
Sbjct: 15 WSRKENKMFEEALAYYGEDTPNRWDKVASAMGGIKSAEEIRCHYEDLTDDVKTIES 70
>Os07g0443500 Myb, DNA-binding domain containing protein
Length = 75
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 43/60 (71%)
Query: 1 MSSSWTTKQNKVFERALAIYDRDTPDRWQNVARAVGGGKSVDDVKRHYEKLIKDVDRIDS 60
M+S W+ ++NK+FE+A+A Y PD W V+RA+GG K+ D+V+ H+E L+ D+ I++
Sbjct: 1 MASEWSKEENKLFEQAIAYYGEGAPDLWHKVSRAMGGTKTADEVRLHFEILVDDIKLIEA 60
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,177,860
Number of extensions: 108812
Number of successful extensions: 356
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 357
Number of HSP's successfully gapped: 10
Length of query: 101
Length of database: 17,035,801
Length adjustment: 69
Effective length of query: 32
Effective length of database: 13,433,035
Effective search space: 429857120
Effective search space used: 429857120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)