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Os07g0443500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Myb, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0898) R2 : 0.527
β1 : -3.6 (0.356) R2dD : 0.137 R2D : -0.273
β2 : 0.965 (0.224) R2dC : 0.0204 R2C : -0.105
β3 : -5.51 (0.261) R2dE : 0.704 R2E : -0.0283
β4 : -4.19 (0.999) R2dD*C : 0.0168 R2D*C : -0.0982
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -3.39 (0.212) R2dN8 : 0.454 R2N8 : -0.13
σ : 1.62
deviance : 1208.52
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C
peak time of C : 16.6
E
wheather : temperature
threshold : 25.04
memory length : 7114
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.43
open length of G : 4.13

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1212.38 1.64 11.4 -3.7 0.986 -5.38 -4.08 1.68 -3.46 16.7 25.05 7143 6.95 4.14
1208.52 1.62 11.4 -3.6 0.965 -5.51 -4.19 -- -3.39 16.6 25.04 7114 7.43 4.13
1251.14 1.65 11.4 -3.83 0.971 -5.54 -- 1.05 -3.42 17 25.04 7130 7.17 4.4
1250.11 1.65 11.4 -3.56 0.981 -5.49 -- -- -3.35 16.7 25.03 7126 7.57 4
1300.01 1.68 11.4 -3.83 -- -5.45 -- 1.21 -3.42 -- 25.04 7135 7.16 4.42
2375.36 2.28 10.8 -0.108 0.72 -- -4.66 -- -1.06 16.6 -- -- -- --
2430.53 2.31 10.8 -0.141 0.736 -- -- -- -1.09 17.7 -- -- -- --
1297.75 1.68 11.4 -3.71 -- -5.47 -- -- -3.38 -- 25.08 7136 7.63 3.96
1430.22 1.76 11.2 -- 0.918 -4.89 -- -- -2.76 16.3 25.9 7188 7.44 3.35
2458.61 2.32 10.8 -0.164 -- -- -- -- -1.11 -- -- -- -- --
2431.06 2.31 10.8 -- 0.738 -- -- -- -1.07 17.7 -- -- -- --
1476.13 1.79 11.2 -- -- -4.87 -- -- -2.7 -- 25.9 7201 7.51 3.15
2459.32 2.31 10.8 -- -- -- -- -- -1.09 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1284.58 temperature 25 14400 > th dose independent rect. 10 2
3 1292.74 temperature 25 14400 < th dose independent rect. 10 2
8 1300.17 radiation 1 14400 < th dose dependent rect. 2 3
9 1300.58 temperature 25 4320 < th dose independent rect. 7 4
10 1300.71 radiation 1 14400 < th dose dependent rect. 4 1
21 1306.23 temperature 25 14400 > th dose dependent rect. 15 1
30 1308.52 temperature 25 14400 > th dose independent rect. 2 12
32 1308.97 temperature 25 1440 > th dose dependent rect. 6 14
35 1309.21 temperature 25 1440 > th dose dependent rect. 6 17
39 1309.46 temperature 25 1440 > th dose dependent sin 21 NA
58 1310.24 temperature 25 1440 > th dose dependent rect. 11 22
75 1310.90 temperature 25 1440 > th dose dependent rect. 10 9
96 1311.65 temperature 25 1440 > th dose dependent rect. 10 13
134 1313.27 temperature 25 1440 > th dose dependent rect. 21 22
136 1313.34 temperature 25 1440 > th dose dependent rect. 13 23
169 1314.26 temperature 25 14400 < th dose independent rect. 4 9
180 1314.79 temperature 25 1440 > th dose dependent no NA NA
221 1316.95 temperature 25 14400 > th dose independent rect. 1 19
230 1317.22 temperature 25 14400 > th dose independent sin 3 NA
251 1318.12 temperature 25 14400 > th dose dependent rect. 12 1
313 1320.72 humidity 80 43200 > th dose independent rect. 12 1
332 1321.55 temperature 25 14400 > th dose independent rect. 10 11
333 1321.67 temperature 25 14400 < th dose independent rect. 1 19
340 1321.99 temperature 25 14400 < th dose independent sin 2 NA
355 1322.61 temperature 25 14400 > th dose independent rect. 7 14
357 1322.73 temperature 25 14400 > th dose independent rect. 8 22
359 1322.76 temperature 25 14400 > th dose independent rect. 10 20
386 1323.71 temperature 25 14400 < th dose independent rect. 7 14
488 1327.33 radiation 1 1440 < th dose dependent rect. 18 23
495 1327.50 temperature 25 14400 > th dose independent rect. 17 22
497 1327.55 humidity 90 43200 > th dose independent rect. 21 3
502 1327.66 temperature 25 14400 > th dose independent rect. 17 3
531 1328.53 temperature 25 14400 < th dose independent rect. 7 22
593 1330.38 temperature 25 14400 > th dose independent no NA NA
626 1331.12 temperature 25 14400 > th dose independent rect. 19 23
644 1331.53 humidity 90 43200 > th dose independent rect. 21 1
651 1331.75 humidity 90 43200 > th dose dependent rect. 22 2
695 1333.02 temperature 25 1440 > th dose dependent rect. 16 1
696 1333.10 temperature 25 14400 < th dose independent rect. 17 3
723 1333.55 temperature 20 14400 > th dose dependent rect. 15 8
744 1334.29 temperature 25 14400 < th dose independent rect. 17 22
762 1334.68 temperature 25 14400 < th dose independent rect. 4 23
785 1335.38 temperature 25 14400 < th dose independent no NA NA
801 1335.68 temperature 25 14400 > th dose dependent rect. 11 19
805 1335.83 wind 5 43200 > th dose dependent rect. 11 3
861 1337.07 wind 7 43200 < th dose independent rect. 10 4
873 1337.31 wind 3 43200 > th dose dependent rect. 11 1
879 1337.60 radiation 1 14400 > th dose independent rect. 18 1
931 1338.73 humidity 80 43200 > th dose independent rect. 11 3
947 1339.15 temperature 25 14400 > th dose dependent sin 20 NA
950 1339.18 radiation 1 14400 < th dose dependent rect. 22 7
951 1339.18 radiation 1 1440 < th dose dependent rect. 18 11
956 1339.23 atmosphere 1005 43200 > th dose independent rect. 18 1
990 1340.09 humidity 90 43200 < th dose independent rect. 10 1