BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0443500 Os07g0443500|Os07g0443500
(75 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0443500 Myb, DNA-binding domain containing protein 159 6e-40
Os05g0567600 103 4e-23
Os05g0579700 85 1e-17
Os05g0579600 Homeodomain-like containing protein 82 9e-17
Os01g0635000 77 3e-15
Os01g0635200 Homeodomain-like containing protein 75 1e-14
Os03g0252900 69 8e-13
Os02g0706400 Similar to RADIALIS 67 3e-12
Os12g0522900 66 4e-12
>Os07g0443500 Myb, DNA-binding domain containing protein
Length = 75
Score = 159 bits (401), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 1 MASEWSKEENKLFEQAIAYYGEGAPDLWHKVSRAMGGTKTADEVRLHFEILVDDIKLIEA 60
MASEWSKEENKLFEQAIAYYGEGAPDLWHKVSRAMGGTKTADEVRLHFEILVDDIKLIEA
Sbjct: 1 MASEWSKEENKLFEQAIAYYGEGAPDLWHKVSRAMGGTKTADEVRLHFEILVDDIKLIEA 60
Query: 61 RRVPFPKYNTQGAWN 75
RRVPFPKYNTQGAWN
Sbjct: 61 RRVPFPKYNTQGAWN 75
>Os05g0567600
Length = 85
Score = 103 bits (256), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 57/72 (79%)
Query: 4 EWSKEENKLFEQAIAYYGEGAPDLWHKVSRAMGGTKTADEVRLHFEILVDDIKLIEARRV 63
EWS++ENK+FE+A+AYYGE P+ W KV+ AMGG K+A+E+R H+E L DD+K IE+ RV
Sbjct: 14 EWSRKENKMFEEALAYYGEDTPNRWDKVASAMGGIKSAEEIRCHYEDLTDDVKTIESGRV 73
Query: 64 PFPKYNTQGAWN 75
FPKY TQG W
Sbjct: 74 QFPKYKTQGYWT 85
>Os05g0579700
Length = 111
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 48/64 (75%)
Query: 5 WSKEENKLFEQAIAYYGEGAPDLWHKVSRAMGGTKTADEVRLHFEILVDDIKLIEARRVP 64
W++ +NK FE A+A Y + PD WH ++R MGG K+ADEVR HF+ LV+D+ IE+ RVP
Sbjct: 27 WTQRQNKQFECALAVYDKETPDRWHNIARYMGGAKSADEVRRHFDHLVEDVSRIESGRVP 86
Query: 65 FPKY 68
FP+Y
Sbjct: 87 FPRY 90
>Os05g0579600 Homeodomain-like containing protein
Length = 90
Score = 82.0 bits (201), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 54/71 (76%)
Query: 3 SEWSKEENKLFEQAIAYYGEGAPDLWHKVSRAMGGTKTADEVRLHFEILVDDIKLIEARR 62
++W +++NKLFEQA+A Y + PD WH ++RA+GG K+A++V+ ++E+L +DIK IE+ +
Sbjct: 7 AQWPQKQNKLFEQALAVYDKETPDRWHNIARAVGGGKSAEDVKRYYEMLEEDIKHIESGK 66
Query: 63 VPFPKYNTQGA 73
VPFP Y A
Sbjct: 67 VPFPAYRCPAA 77
>Os01g0635000
Length = 93
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 46/62 (74%)
Query: 4 EWSKEENKLFEQAIAYYGEGAPDLWHKVSRAMGGTKTADEVRLHFEILVDDIKLIEARRV 63
EW+K++NK FE+A+A Y APD WH V+R MGG K+A+EVR H+E L D++ IEA V
Sbjct: 19 EWTKQQNKQFERALAVYDTDAPDRWHNVARYMGGAKSAEEVRRHYERLQADVEQIEAGGV 78
Query: 64 PF 65
PF
Sbjct: 79 PF 80
>Os01g0635200 Homeodomain-like containing protein
Length = 85
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 2 ASEWSKEENKLFEQAIAYYGEGAPDLWHKVSRAMGGTKTADEVRLHFEILVDDIKLIEAR 61
A +W+ +N+ FE+A+A Y P+ WH ++RA+ G K+ADEV+L++++LV+D+K IE
Sbjct: 11 APQWTARQNEQFERALAVYDRDTPERWHNIARAVAG-KSADEVKLYYDLLVEDVKRIETG 69
Query: 62 RVPFPKYNT 70
+VPFP Y
Sbjct: 70 KVPFPAYRC 78
>Os03g0252900
Length = 102
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 4 EWSKEENKLFEQAIAYYGEGAPDLWHKVSRAMGGTKTADEVRLHFEILVDDIKLIEARRV 63
+WS+ EN FEQA+A Y P W +V+ +GG KTAD+VR HF++LVDD IE+
Sbjct: 2 DWSRAENARFEQALAMYDRDTPGRWERVAAVVGGGKTADDVRRHFDLLVDDCGSIESGNY 61
Query: 64 PFP 66
+P
Sbjct: 62 GYP 64
>Os02g0706400 Similar to RADIALIS
Length = 101
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 43/60 (71%)
Query: 1 MASEWSKEENKLFEQAIAYYGEGAPDLWHKVSRAMGGTKTADEVRLHFEILVDDIKLIEA 60
M+S W+ ++NK+FE+A+A Y PD W V+RA+GG K+ D+V+ H+E L+ D+ I++
Sbjct: 1 MSSSWTTKQNKVFERALAIYDRDTPDRWQNVARAVGGGKSVDDVKRHYEKLIKDVDRIDS 60
>Os12g0522900
Length = 109
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 44/60 (73%)
Query: 1 MASEWSKEENKLFEQAIAYYGEGAPDLWHKVSRAMGGTKTADEVRLHFEILVDDIKLIEA 60
M+S W+ ++NKLFE+A+A Y + P W V+RA+GG KTA+EV+ H++ L+ D+ IE+
Sbjct: 1 MSSSWTTKQNKLFERALATYDKDTPGRWQNVARAVGGGKTAEEVKRHYDKLLQDLHHIES 60
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,853,596
Number of extensions: 94600
Number of successful extensions: 347
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 10
Length of query: 75
Length of database: 17,035,801
Length adjustment: 46
Effective length of query: 29
Effective length of database: 14,633,957
Effective search space: 424384753
Effective search space used: 424384753
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)