BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0531300 Os01g0531300|Os01g0531300
(435 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0531300 Conserved hypothetical protein 833 0.0
Os12g0425700 231 7e-61
Os01g0780400 WD40-like domain containing protein 186 2e-47
Os05g0533300 181 7e-46
Os06g0679900 172 5e-43
Os04g0621500 Disease resistance protein family protein 162 4e-40
Os02g0723500 158 9e-39
Os11g0578200 153 3e-37
Os09g0503050 152 5e-37
Os06g0680000 145 9e-35
Os07g0652400 141 1e-33
Os01g0689100 137 1e-32
Os02g0657500 122 4e-28
Os03g0409200 110 2e-24
Os10g0488500 107 2e-23
Os09g0440000 Hypothetical protein 96 7e-20
Os04g0677700 Conserved hypothetical protein 90 3e-18
Os07g0683700 80 4e-15
Os11g0573700 RNA-directed DNA polymerase (Reverse transcrip... 76 6e-14
Os04g0116400 71 1e-12
Os08g0410200 71 2e-12
Os01g0298000 70 3e-12
Os06g0680100 69 5e-12
Os10g0494800 Similar to Katanin p80 WD40-containing subunit... 66 4e-11
Os01g0352000 65 7e-11
>Os01g0531300 Conserved hypothetical protein
Length = 435
Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/435 (97%), Positives = 422/435 (97%)
Query: 1 MAGGDGEEAGKIAEPSQAYEKDLSTIDEAMIPIDLMQSHDEFINAVKSRLTKLEGTNLAY 60
MAGGDGEEAGKIAEPSQAYEKDLSTIDEAMIPIDLMQSHDEFINAVKSRLTKLEGTNLAY
Sbjct: 1 MAGGDGEEAGKIAEPSQAYEKDLSTIDEAMIPIDLMQSHDEFINAVKSRLTKLEGTNLAY 60
Query: 61 LCMIDYTYEEALLSLAPAVYAAVPARLRNHRTVAEAMTDRRWIQDIQFGVGYSSDPRVFQ 120
LCMIDYTYEEALLSLAPAVYAAVPARLRNHRTVAEAMTDRRWIQDIQFGVGYSSDPRVFQ
Sbjct: 61 LCMIDYTYEEALLSLAPAVYAAVPARLRNHRTVAEAMTDRRWIQDIQFGVGYSSDPRVFQ 120
Query: 121 ALGLPSVSAAFRRAGLSILAVGDLGRILFPLGLLCSLFWKNSSPAQANLAIFGAPSLSLL 180
ALGLPSVSAAFRRAGLSILAVGDLGRILFPLGLLCSLFWKNSSPAQANLAIFGAPSLSLL
Sbjct: 121 ALGLPSVSAAFRRAGLSILAVGDLGRILFPLGLLCSLFWKNSSPAQANLAIFGAPSLSLL 180
Query: 181 PLVETIDHLLVACPESRQLWWVALRAIGHSECLPINEHSFLSWLCDCRKRMVKEHRRGFD 240
PLVETIDHLLVACPESRQLWWVALRAIGHSECLPINEHSFLSWLCDCRKRMVKEHRRGFD
Sbjct: 181 PLVETIDHLLVACPESRQLWWVALRAIGHSECLPINEHSFLSWLCDCRKRMVKEHRRGFD 240
Query: 241 TIATLVAWTIWKERNNRVFNQKSRSWAEVVRVMTGEAELWRLARAAIPALVAHMMRHVFD 300
TIATLVAWTIWKERNNRVFNQKSRSWAEVVRVMTGEAELWRLARAAIPALVAHMMRHVFD
Sbjct: 241 TIATLVAWTIWKERNNRVFNQKSRSWAEVVRVMTGEAELWRLARAAIPALVAHMMRHVFD 300
Query: 301 QNGIKGAIAAVAKLPDNAVQADVVSTLKRKXXXXXXXXXXXXXPVLAGLLTSKAERHAIV 360
QNGIKGAIAAVAKLPDNAVQADVVSTLKRK PVLAGLLTSKAERHAIV
Sbjct: 301 QNGIKGAIAAVAKLPDNAVQADVVSTLKRKLDLFSLDIFLSFLPVLAGLLTSKAERHAIV 360
Query: 361 SLELLLDLIKIFGPVIRSTLSAHSAVGVDIQAEQRRGGQSAQLAQELNLSLHDLVLHSAI 420
SLELLLDLIKIFGPVIRSTLSAHSAVGVDIQAEQRRGGQSAQLAQELNLSLHDLVLHSAI
Sbjct: 361 SLELLLDLIKIFGPVIRSTLSAHSAVGVDIQAEQRRGGQSAQLAQELNLSLHDLVLHSAI 420
Query: 421 LVANQFWLAMVLLSY 435
LVANQFWLAMVLLSY
Sbjct: 421 LVANQFWLAMVLLSY 435
>Os12g0425700
Length = 697
Score = 231 bits (589), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 142/295 (48%), Positives = 175/295 (59%), Gaps = 53/295 (17%)
Query: 44 NAVKSRLTKLEGTNLAYLCMIDYTYE-EALLSLAPAVYAAVPARLRNHRTVAEAMTDRRW 102
N V + L G + L D E ++ SLAPAVYAAVP+RLRN RTVAEA+ DRRW
Sbjct: 405 NLVTISMICLVGDGTSVLFWEDNWLEGSSIRSLAPAVYAAVPSRLRNRRTVAEALHDRRW 464
Query: 103 IQDIQFGVG------YSSDPRVFQALGLPSV---------------SAAFRRAGLSILAV 141
++DI +G Y + +A+ L +V S + RA LS
Sbjct: 465 VRDIAAALGIQAILEYLKLWEILRAIQLTAVPDSLIWRWESSGEYSSWSAYRALLS---- 520
Query: 142 GDLGRILFPLGLLCSLFWKNSSPAQANLAIF------------------GAPSLSLL--P 181
GRI F + WK+ +P + ++ P+ +L
Sbjct: 521 ---GRIHFEYKPI----WKSWAPPRCCYFLWLVALNRCWTADCLRSHGLSHPACCVLCDQ 573
Query: 182 LVETIDHLLVACPESRQLWWVALRAIGHSECLPINEHSFLSWLCDCRKRMVKEHRRGFDT 241
ETIDHLLVACPESRQLWW+ALRAIGHSECLPINE SF WLCD RK+++K HRRGFDT
Sbjct: 574 SDETIDHLLVACPESRQLWWIALRAIGHSECLPINEPSFHIWLCDSRKKVIKAHRRGFDT 633
Query: 242 IATLVAWTIWKERNNRVFNQKSRSWAEVVRVMTGEAELWRLARAAIPALVAHMMR 296
IATLVAWTIWKERN RVFNQ +RSW ++ R M GEA+LWRLARAAIP++V H+ R
Sbjct: 634 IATLVAWTIWKERNIRVFNQINRSWVDIARAMAGEADLWRLARAAIPSVVIHLDR 688
>Os01g0780400 WD40-like domain containing protein
Length = 838
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/170 (64%), Positives = 115/170 (67%), Gaps = 25/170 (14%)
Query: 270 VRVMTGEAELWRLARAAIPALVAHMMRHVFDQNGIKGAIAAVAKLPDNAVQADVVSTLKR 329
+ +M E ++ + L MMRHVFDQNGIKGAIAAVAKLPDNAV ADVVSTLK
Sbjct: 670 INLMQNHDEFINAVKSRLTKL--EMMRHVFDQNGIKGAIAAVAKLPDNAVLADVVSTLKG 727
Query: 330 KXXXXXXXXXXXXXPVLAGLLTSKAERHAIVSLELLLDLIKIFGPVIRSTLSAHSAVGVD 389
K PVLAGLLTSKAERHAIVSLELLLDLIKIFGPVIRSTLSAHSAVGVD
Sbjct: 728 KLDLFNLDIFLSFLPVLAGLLTSKAERHAIVSLELLLDLIKIFGPVIRSTLSAHSAVGVD 787
Query: 390 IQAEQR-----------------------RGGQSAQLAQELNLSLHDLVL 416
IQAEQR RGGQSAQLAQELNLSL DLV+
Sbjct: 788 IQAEQRLQRCSRCFNHLQKIQQVLHPLIMRGGQSAQLAQELNLSLQDLVV 837
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 8/72 (11%)
Query: 13 AEPSQAYEKDLSTIDEAMIPIDLMQSHDEFINAVKSRLTKLEGTNLAYLCMIDYTYEEAL 72
AEPSQAYEKDLSTIDEAMIPI+LMQ+HDEFINAVKSRLTKLE M+ + +++
Sbjct: 650 AEPSQAYEKDLSTIDEAMIPINLMQNHDEFINAVKSRLTKLE--------MMRHVFDQNG 701
Query: 73 LSLAPAVYAAVP 84
+ A A A +P
Sbjct: 702 IKGAIAAVAKLP 713
>Os05g0533300
Length = 385
Score = 181 bits (460), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 152/294 (51%), Gaps = 39/294 (13%)
Query: 33 IDLMQSHDEFINAVKSRLTKLEGTNLAYLCMIDYTYEEALLSLAPAVYAAVPARLRNHRT 92
+D+ S E S + +L + E + S+AP +Y V +R HRT
Sbjct: 94 LDIPGSQKEKSFVAASTVCQLGDGQTILFWEDSWLQEGCIRSIAPNIYDRVSPCMRRHRT 153
Query: 93 VAEAMTDRRWIQDIQFGVGYSSDPRVFQ-------ALGLPSVSAAF--------RRAGLS 137
VAEA+TDRRWI+DI +G + + A +P+ +F + S
Sbjct: 154 VAEALTDRRWIKDIAGALGIQAILEYLKLWSLLHLATCIPTTPDSFSWKWESSGQYISRS 213
Query: 138 ILAVGDLGRILFPLGLLCSLFWKNSSPAQANLAIF----------------GAPSLSLLP 181
GRI F L + WK+ +P + ++ G P L
Sbjct: 214 SYKALFFGRISF----LSTPIWKSLAPPRCRFFLWLVAINRCWTADRLRSQGLPHLDRCV 269
Query: 182 LV----ETIDHLLVACPESRQLWWVALRAIGHSECLPINEHSFLSWLCDCRKRMVKEHRR 237
L E+IDH+LV CPESRQLWW LRA+G +CLPINE SF WLC R ++ ++HR
Sbjct: 270 LCDQKEESIDHILVGCPESRQLWWWTLRALGIPDCLPINEPSFHLWLCGSRMKLREQHRW 329
Query: 238 GFDTIATLVAWTIWKERNNRVFNQKSRSWAEVVRVMTGEAELWRLARAAIPALV 291
GFDTI TL+AW+IWKE+NNR+FNQ+S+SW EV + M EA LW+ A +P+++
Sbjct: 330 GFDTITTLMAWSIWKEQNNRIFNQQSKSWIEVAKAMVEEAVLWKSTNAGVPSIL 383
>Os06g0679900
Length = 159
Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 78/107 (72%), Positives = 89/107 (83%)
Query: 184 ETIDHLLVACPESRQLWWVALRAIGHSECLPINEHSFLSWLCDCRKRMVKEHRRGFDTIA 243
ETIDHLLVACPESRQLWW ALRAIG S+ LP NE SF+SWLCD R ++ K RRGFDTI
Sbjct: 38 ETIDHLLVACPESRQLWWFALRAIGLSDMLPFNEPSFISWLCDKRMKVAKAQRRGFDTIT 97
Query: 244 TLVAWTIWKERNNRVFNQKSRSWAEVVRVMTGEAELWRLARAAIPAL 290
L+AWTIW+ERNNRVFNQ+ ++W EV +VMT EAELWRLA AA+P L
Sbjct: 98 ALIAWTIWEERNNRVFNQQQKTWVEVAKVMTAEAELWRLANAAMPEL 144
>Os04g0621500 Disease resistance protein family protein
Length = 1715
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 74/107 (69%), Positives = 81/107 (75%)
Query: 184 ETIDHLLVACPESRQLWWVALRAIGHSECLPINEHSFLSWLCDCRKRMVKEHRRGFDTIA 243
E+IDH+LVACPESRQLWW+ L AI ECLP+NE SF SWLCD R+ RRGFDTIA
Sbjct: 1596 ESIDHILVACPESRQLWWLLLSAISRPECLPVNEISFHSWLCDKRETFPSSQRRGFDTIA 1655
Query: 244 TLVAWTIWKERNNRVFNQKSRSWAEVVRVMTGEAELWRLARAAIPAL 290
TL AWTIWKE NNRVFNQK RSW EV R M EA LWRL A+PA+
Sbjct: 1656 TLAAWTIWKEWNNRVFNQKQRSWTEVARAMAEEAALWRLTNTAMPAM 1702
>Os02g0723500
Length = 210
Score = 158 bits (399), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 118/212 (55%), Gaps = 34/212 (16%)
Query: 93 VAEAMTDRRWIQDIQFGVGYSSDPRVFQ--------ALGLPSVSAAFRRAGLSILAVGDL 144
+++A+ DRRWI+DI +G + F+ L ++R +
Sbjct: 1 MSKALHDRRWIRDISLALGMQAILEYFKLWEHLRSVQLSDEPDKLSWRWENSGQYSSRSA 60
Query: 145 GRILFPLG---LLCSLFWKNSSPAQANLAIF----------------GAPSLSLLPLV-- 183
RILF LG WK+ +P Q ++ G PL
Sbjct: 61 YRILF-LGRTQFQHKPIWKSFAPPQCRYFLWLVALKRCWTADRLRSRGLSHPDRCPLCDQ 119
Query: 184 --ETIDHLLVACPESRQLWWVALRAIGHSECLPINEHSFLSWLCDCRKRMVKEHRRGFDT 241
E IDHLLVACP+SRQLWW+AL AIGHSECLP+NE SF ++ D KRM+K+HRRGFDT
Sbjct: 120 CDEMIDHLLVACPKSRQLWWIALSAIGHSECLPLNEQSFHAY--DSPKRMIKDHRRGFDT 177
Query: 242 IATLVAWTIWKERNNRVFNQKSRSWAEVVRVM 273
IATLVAWTIWKERNNRVFNQKSR W E+ R M
Sbjct: 178 IATLVAWTIWKERNNRVFNQKSRPWMEIARAM 209
>Os11g0578200
Length = 874
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 70/85 (82%), Positives = 77/85 (90%)
Query: 206 AIGHSECLPINEHSFLSWLCDCRKRMVKEHRRGFDTIATLVAWTIWKERNNRVFNQKSRS 265
AIGHS+CLP+NE SF SWL D K+MVKEHRRGFDTIATLVAWTIWKERNN VFNQKSR+
Sbjct: 712 AIGHSQCLPLNEPSFHSWLYDSHKKMVKEHRRGFDTIATLVAWTIWKERNNWVFNQKSRT 771
Query: 266 WAEVVRVMTGEAELWRLARAAIPAL 290
WAE+ RVMTGEAELWRLA+AAIP +
Sbjct: 772 WAEIARVMTGEAELWRLAKAAIPVV 796
>Os09g0503050
Length = 169
Score = 152 bits (384), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 70/96 (72%), Positives = 79/96 (82%)
Query: 184 ETIDHLLVACPESRQLWWVALRAIGHSECLPINEHSFLSWLCDCRKRMVKEHRRGFDTIA 243
E ID+LLVACPESRQLWW+ALRAIG + LP+NE SF WLCD RKR+ K R GFDTIA
Sbjct: 74 EIIDYLLVACPESRQLWWMALRAIGQTSSLPMNEVSFHLWLCDSRKRLTKAARHGFDTIA 133
Query: 244 TLVAWTIWKERNNRVFNQKSRSWAEVVRVMTGEAEL 279
TL+AWTIWKERNNRVFNQ+ ++WAEV R M EAEL
Sbjct: 134 TLIAWTIWKERNNRVFNQQQKTWAEVARAMAAEAEL 169
>Os06g0680000
Length = 222
Score = 145 bits (365), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 117/216 (54%), Gaps = 31/216 (14%)
Query: 82 AVPARLRNHRTVAEAMTDRRWIQDIQFGVGYS---------SDPRVFQALGLPSVSAAFR 132
AV AR RN RTV EA+ R WI+DI +G + + AL S S +R
Sbjct: 6 AVAARTRNCRTVREALQGRTWIRDISGALGIQAILEYLSLWTSLQSLDALSEESDSIIWR 65
Query: 133 ------RAGLSILAVGDLGRILF---PL-GLL----CSLF-WK---NSSPAQANLAIFGA 174
+ S +GR+ F P+ G L C F W N L G
Sbjct: 66 WESSGEYSARSAYQSMFVGRVQFQDKPIWGSLAPPRCRYFLWLVALNRCWTADRLRRRGL 125
Query: 175 PSLSLLPLV----ETIDHLLVACPESRQLWWVALRAIGHSECLPINEHSFLSWLCDCRKR 230
P L ETIDHLLVACPESRQLWW ALRAIG S+ LP NE SFL WLCD R +
Sbjct: 126 PHPDRCVLCDQGDETIDHLLVACPESRQLWWFALRAIGLSDILPFNEPSFLLWLCDKRVK 185
Query: 231 MVKEHRRGFDTIATLVAWTIWKERNNRVFNQKSRSW 266
+ K RRGFDTIA L+AWTIWKE+NNRVFNQ+ ++W
Sbjct: 186 VAKAQRRGFDTIAPLIAWTIWKEQNNRVFNQQQKTW 221
>Os07g0652400
Length = 758
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 127/239 (53%), Gaps = 35/239 (14%)
Query: 64 IDYTYEEALLSLAPAVYAAVPARLRNHRTVAEAMTDRRWIQDI------QFGVGYSSDPR 117
ID ++ +LAPAV+AAV AR RN RTV +A+ R WI+DI Q + Y S
Sbjct: 430 IDKIQGSSIRTLAPAVHAAVAARTRNRRTVRKALQGRTWIRDISGAFEIQAILEYLSLWT 489
Query: 118 VFQAL-----------------GLPSVSAAFRRAGLSILAVGD---LGRILFPLGLLCSL 157
Q+L G S +A++ + + D G + P C
Sbjct: 490 SLQSLDALTEEPDSIIWRWESSGEYSAHSAYQSMFVGRVQFQDKPIWGSLAPPR--CCYF 547
Query: 158 FWK---NSSPAQANLAIFGAPSLSLLPLV----ETIDHLLVACPESRQLWWVALRAIGHS 210
W N L G P L ETIDHLLVACPESRQL W ALRAIG S
Sbjct: 548 LWLVALNRCWTADRLRRQGLPHPDRCVLCDQDDETIDHLLVACPESRQLCWFALRAIGLS 607
Query: 211 ECLPINEHSFLSWLCDCRKRMVKEHRRGFDTIATLVAWTIWKERNNRVFNQKSRSWAEV 269
+ LP NE SFLSWLCD R ++ K RRGFDT+A L+AWTIWKE NNRVFNQ+ ++W EV
Sbjct: 608 DILPFNEPSFLSWLCDKRMKVAKAQRRGFDTVAALIAWTIWKEWNNRVFNQQQKTWVEV 666
>Os01g0689100
Length = 169
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 98/175 (56%), Gaps = 33/175 (18%)
Query: 71 ALLSLAPAVYAAVPARLRNHRTVAEAMTDRRWIQDIQFGVGYSSDPR-----VFQALGLP 125
++ SLAPA+YAAVPARLRNHRTVAE T + + V + R ++Q+L P
Sbjct: 19 SIRSLAPAIYAAVPARLRNHRTVAEWETSGEYSSRSAYRVLFFGRTRLQHKPIWQSLAPP 78
Query: 126 SVSAAFRRAGLSILAVGDLGR---ILFPLG-LLCSLFWKNSSPAQANLAIFGAPSLSLLP 181
L+ D R +L P G +LC
Sbjct: 79 RCRYFLWLVALNRYWTADRLRSRGLLHPDGCVLCD------------------------Q 114
Query: 182 LVETIDHLLVACPESRQLWWVALRAIGHSECLPINEHSFLSWLCDCRKRMVKEHR 236
ETIDHLLVACPES+QLWWVALRAIGHSECLP+NEHSF SWLCDC K+MVKEHR
Sbjct: 115 CEETIDHLLVACPESQQLWWVALRAIGHSECLPLNEHSFFSWLCDCHKKMVKEHR 169
>Os02g0657500
Length = 380
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 66/81 (81%)
Query: 184 ETIDHLLVACPESRQLWWVALRAIGHSECLPINEHSFLSWLCDCRKRMVKEHRRGFDTIA 243
E+IDH+LVACPESRQLWW L+AI CL +NE SF +WLC+ R ++ + HRRGFDT+
Sbjct: 89 ESIDHILVACPESRQLWWWTLQAIRSPNCLLVNEPSFHNWLCESRMKIGERHRRGFDTVV 148
Query: 244 TLVAWTIWKERNNRVFNQKSR 264
TL+AWTIWKERNN++FNQ+ R
Sbjct: 149 TLMAWTIWKERNNQIFNQQQR 169
>Os03g0409200
Length = 201
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 56/73 (76%)
Query: 184 ETIDHLLVACPESRQLWWVALRAIGHSECLPINEHSFLSWLCDCRKRMVKEHRRGFDTIA 243
ETIDHLLVACPESRQLWW ALR I S+ L NE SFL WLCD R ++ K RRGFDT+A
Sbjct: 114 ETIDHLLVACPESRQLWWFALREIDLSDILQFNEPSFLLWLCDKRMKVAKAQRRGFDTVA 173
Query: 244 TLVAWTIWKERNN 256
L+AWTIWKER
Sbjct: 174 ALIAWTIWKERTT 186
>Os10g0488500
Length = 125
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 200 WWVALRAIGHSECLPINEHSFLSWLCDCRKRMVKEHRRGFDTIATLVAWTIWKERNNRVF 259
WW+AL AIG LP+NE SFL WLCD R+R+V+ RRGF TIATLVAWTIWKE+NNR+F
Sbjct: 44 WWMALGAIGLQAYLPMNESSFLHWLCDTRERLVESQRRGFVTIATLVAWTIWKEKNNRIF 103
Query: 260 NQKSRSWAEVVR 271
N + ++W E+ R
Sbjct: 104 NHQHKAWLEIAR 115
>Os09g0440000 Hypothetical protein
Length = 65
Score = 95.5 bits (236), Expect = 7e-20, Method: Composition-based stats.
Identities = 40/65 (61%), Positives = 51/65 (78%)
Query: 215 INEHSFLSWLCDCRKRMVKEHRRGFDTIATLVAWTIWKERNNRVFNQKSRSWAEVVRVMT 274
+NE SF +WLC+ R ++ + HRRGFDT+ LVAWTIWK+RNNR+FNQ+ RSW EVV+ M
Sbjct: 1 VNESSFHNWLCESRMKIGERHRRGFDTVMILVAWTIWKKRNNRIFNQQQRSWTEVVKAMA 60
Query: 275 GEAEL 279
EA L
Sbjct: 61 EEAML 65
>Os04g0677700 Conserved hypothetical protein
Length = 156
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 79/131 (60%), Gaps = 6/131 (4%)
Query: 268 EVVRVMTGEAELW-RLARAAIPAL-VAHMMRHVFDQNGIKGAIAAVAKLPDNAVQADVVS 325
+V+ V+ + EL+ R+ + L + H M + +N I+G IAA+ K+ D+AV ADV S
Sbjct: 1 DVLSVLMEQHELFLSSTRSRLTKLQIVHQM---WQRNDIRGIIAAMEKMSDHAVSADVAS 57
Query: 326 TLKRKXXXXXXXXXXXXXPVLAGLLTSKAERHAIVSLELLLDLIKIFGPVIRSTLSAH-S 384
L K PVL LL SK +RH VSLELL+ L++ FG VI ST+SA S
Sbjct: 58 VLMEKSETITLDLCTVILPVLTDLLESKTDRHLGVSLELLVKLVRTFGSVIHSTVSAGPS 117
Query: 385 AVGVDIQAEQR 395
+VGVD+QAEQR
Sbjct: 118 SVGVDLQAEQR 128
>Os07g0683700
Length = 680
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 108/261 (41%), Gaps = 40/261 (15%)
Query: 70 EALLSLAPAVYAAVPARLRNHRTVAEAMTDRRWIQDIQFGVGYSSDPRVFQALGL----- 124
++ S+AP + AVP R R RTV + + W+ DI+ G + P + Q L +
Sbjct: 424 RSIASIAPDLLHAVPPRFRGSRTVTAGLANNSWVGDIR---GALTVPVISQFLLVWDAVL 480
Query: 125 -----PSVSA--AFRRAGLSILAVGDLGRILFPLG---LLCS-LFWKNSSPAQANLAIF- 172
P V +R G + + F LG C+ L W PA+ ++
Sbjct: 481 PTQLSPGVEDHLVWRWTGDQCYSARSAYQAFF-LGQHSFACADLLWHAKGPAKCKFFLWF 539
Query: 173 ---------------GAPSLSLLPL----VETIDHLLVACPESRQLWWVALRAIGHSECL 213
G S S P +ET +H+L+ C +RQ+W L G +
Sbjct: 540 AFQQRCWTADLLQKRGIDSHSACPFCAQELETANHILIDCVFARQVWLRVLSPPGWAALS 599
Query: 214 PINEHSFLSWLCDCRKRMVKEHRRGFDTIATLVAWTIWKERNNRVFNQKSRSWAEVVRVM 273
P W R + + R GFD++ LV+W +WKERN+RVF+ S A V+ +
Sbjct: 600 PPRGSWLQDWWSSSRVYLPEHLRSGFDSLVLLVSWQLWKERNSRVFDSVLASVAVVLESI 659
Query: 274 TGEAELWRLARAAIPALVAHM 294
E +LW LA + M
Sbjct: 660 RSEGQLWSLASVTFFGVFLEM 680
>Os11g0573700 RNA-directed DNA polymerase (Reverse transcriptase) domain
containing protein
Length = 700
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 32/228 (14%)
Query: 88 RNHRTVAEAMTDRRWIQDIQFGVGYSSDPRVFQ--------ALGLPSVSAAFRRAGLSIL 139
R+ TVA+A+T+ RW++D+Q + + + FQ L L + ++ + +
Sbjct: 462 RSQLTVAQALTNNRWVRDLQGALSNEAMAQFFQLWDEVHTVELNLEEDTIRWKLSSDGLF 521
Query: 140 AVGDLGRILFPLGLLC---SLFWKNSSPAQANLAIFGAPSLSLLPL-------------- 182
V + F +C L W +P++ ++ A L
Sbjct: 522 TVSSAYSLFFMAREICPFSELIWHIKAPSRVRFFLWLAAKGRCLTADNLGKRGWQHEDCC 581
Query: 183 ------VETIDHLLVACPESRQLWWVALRAIGHSECLPI-NEHSFLSWLCDCRKRMVKEH 235
E HL V C +R++W + IG + LP NE + W R +
Sbjct: 582 SLCQSEAEDCLHLFVTCAFTRRVWRMMQGWIGINFLLPTENEPALADWWMKARMAFRTGY 641
Query: 236 RRGFDTIATLVAWTIWKERNNRVFNQKSRSWAEVVRVMTGEAELWRLA 283
R FD++ L W +WKERN RVF QK RS ++V+ + EA +W+ A
Sbjct: 642 RSIFDSVFALTCWLLWKERNARVFEQKFRSMEQLVQDIKEEAIVWKTA 689
>Os04g0116400
Length = 626
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 44/213 (20%)
Query: 71 ALLSLAPAVYAAVPARLRNHRTVAEAMTDRRWIQDIQFGVGYSSDPRVFQALGLPSVSAA 130
++ S+AP + AVP R R TVA + + W+ DI+ G + PR + A L
Sbjct: 427 SIASIAPDLLHAVPPRFRGSCTVAAGLANNSWVGDIR---GALTVPRCWTADLL------ 477
Query: 131 FRRAGLSILAVGDLGRILFPLGLLCSLFWKNSSPAQANLAIFGAPSLSLLPLVETIDHLL 190
++ G+ + G F A L ET +H+L
Sbjct: 478 -QKRGIDSHSAGP----------------------------FCAQEL------ETANHIL 502
Query: 191 VACPESRQLWWVALRAIGHSECLPINEHSFLSWLCDCRKRMVKEHRRGFDTIATLVAWTI 250
+ C +RQ+W L G + P W R + + GFD++ LV+W +
Sbjct: 503 IDCVFTRQVWLRVLSPPGWAALSPPRGSWLQDWWSSSRVCLPEHLHSGFDSLVLLVSWQL 562
Query: 251 WKERNNRVFNQKSRSWAEVVRVMTGEAELWRLA 283
WKERN++VF+ S V+ + E +LW LA
Sbjct: 563 WKERNSKVFDSALASVVVVLESIRSEGQLWSLA 595
>Os08g0410200
Length = 777
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 40/234 (17%)
Query: 75 LAPAVYAAVPARLRNHRTVAEAMTDRRWIQDI----------QFGVGYSSDPRVFQALGL 124
+AP+++ R +RTVA+ + D RW++ + +F + + S ++ G+
Sbjct: 536 IAPSLFQIAS---RKNRTVAQELGDNRWLRQMRRMNSTVQVREFIILWHSLQQIHLQDGI 592
Query: 125 PSVSAAFRRAGLSILAVGDLGRILFPLGLL----CSLFWKNSSPAQAN------------ 168
S ++R + RI F LG + + WK + +
Sbjct: 593 ED-SISWRWTPNGCYSASSAYRIQF-LGSIQDNRSTFVWKAKTENKCKFFGWLMIHRKIL 650
Query: 169 ----LAIFGAPSLSLLPLV----ETIDHLLVACPESRQLWWVALRAIG-HSECLPINEHS 219
L + G + + PL ET +HLL+ C +RQ+W +G H +
Sbjct: 651 TADKLQLRGWDNSEICPLCGIEPETANHLLMDCAFARQVWSSMWNKLGLHMPSPSLFPGR 710
Query: 220 FLSWLCDCRKRMVKEHRRGFDTIATLVAWTIWKERNNRVFNQKSRSWAEVVRVM 273
L W CRK +VKE RR FD + AW IW +RN R+FN S A+VV +
Sbjct: 711 LLDWWEACRKELVKEQRRNFDGLFIYTAWGIWLQRNGRIFNDIYNSVAQVVNFI 764
>Os01g0298000
Length = 256
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 86/221 (38%), Gaps = 52/221 (23%)
Query: 70 EALLSLAPAVYAAVPARLRNHRTVAEAMTDRRWIQDIQFGVGYSSDPRVFQALGLPSVSA 129
++ S+AP + VP R R RTVA + + W+ DI G + PR + A
Sbjct: 76 RSIASIAPDLLHVVPPRFRGSRTVAAGLANNSWVGDI---CGALTVPRCWTA-------- 124
Query: 130 AFRRAGLSILAVGDLGRILFPLGLLCSLFWKNSSPAQANLAIFGAPSLSLLPL----VET 185
DL L G S S P +ET
Sbjct: 125 -------------DL------------------------LQKRGIDSHSACPFCAQELET 147
Query: 186 IDHLLVACPESRQLWWVALRAIGHSECLPINEHSFLSWLCDCRKRMVKEHRRGFDTIATL 245
+H+L+ C +RQ+W L G + P W R + + R FD++ L
Sbjct: 148 ANHILIDCVFARQVWLRVLSPPGWAALSPPRGSWLQDWWSSSRVCLPEHLRSSFDSLVLL 207
Query: 246 VAWTIWKERNNRVFNQKSRSWAEVVRVMTGEAELWRLARAA 286
V+W +WKERN RVF+ S A V+ E +LW LA A
Sbjct: 208 VSWQLWKERNFRVFDSALASVAVVLESFRSEGQLWSLAGVA 248
>Os06g0680100
Length = 273
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 184 ETIDHLLVACPESRQLWWVALRAIGHSECLPINEH-SFLSWLCDCRKRMVKEHRRGFDTI 242
E+ DHLL+ CP S ++W + IG S LP ++ F W R R FD++
Sbjct: 166 ESCDHLLLQCPFSNRVWGLVRTWIGTSFPLPGEDNWEFADWWMKARSCFQTRSRGAFDSL 225
Query: 243 ATLVAWTIWKERNNRVFNQKSRSWAEVVRVMTGEAELWRLA 283
L+ W +W+ERN R+F QK+R+ E+ R + E +WR A
Sbjct: 226 CLLICWFVWRERNFRIFEQKTRTALELFRDIKDEVVVWREA 266
>Os10g0494800 Similar to Katanin p80 WD40-containing subunit B1 (Katanin p80
subunit B1) (p80 katanin)
Length = 875
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 24/138 (17%)
Query: 301 QNGIKGAIAAVAKLPDNAVQADVVSTLKRKXXXXXXXXXXXXXPVLAGLL-TSKAERHAI 359
N +KG+I A ++ D V AD++S L P+ + +L S +RH
Sbjct: 732 NNDVKGSIDATRRIQDLDVTADIISVLMENDNSITLDICTCVLPLASSVLEKSSYDRHLK 791
Query: 360 VSLELLLDLIKIFGPVIRSTLSAHSAVGVDIQAEQ-----------------------RR 396
V+LE++L L+K FG I S +S+ VGVDI+AEQ RR
Sbjct: 792 VALEMILKLVKSFGSTISSAVSSTPPVGVDIEAEQRLNRCNLCFLELIKVHSVLFALTRR 851
Query: 397 GGQSAQLAQELNLSLHDL 414
G+ + AQEL+L L D+
Sbjct: 852 QGEVGRSAQELSLFLQDI 869
>Os01g0352000
Length = 305
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 160 KNSSPAQANLAIFGAPSLSLLPLVETID----HLLVACPESRQLWWVALRAIGHSECLPI 215
KN NLA P L PL + D HL V C +W + R S +P
Sbjct: 169 KNQCLTADNLAKRNWPHDDLCPLYQRQDEDCHHLFVGCDYMVAVWRIIRRWCSASFAIPA 228
Query: 216 NEHSFLS-WLCDCRKRMVKEHRRGFDTIATLVAWTIWKERNNRVFNQKSRSWAEVVRVMT 274
+E + LS W R+R +R FD+ L+ W IWKE N RVF S+S ++ +
Sbjct: 229 DEENTLSDWWLATRRRFRTSYRTDFDSAFMLICWLIWKELNARVFQHVSKSPEQLAEDIK 288
Query: 275 GEAELWRLA 283
E +WR+A
Sbjct: 289 QEIAIWRVA 297
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,883,283
Number of extensions: 534962
Number of successful extensions: 1672
Number of sequences better than 1.0e-10: 27
Number of HSP's gapped: 1675
Number of HSP's successfully gapped: 28
Length of query: 435
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 331
Effective length of database: 11,605,545
Effective search space: 3841435395
Effective search space used: 3841435395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)