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Os04g0677700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.33 (0.0357) R2 : 0.425
β1 : -2.12 (0.132) R2dD : 0.338 R2D : 0.231
β2 : 0.663 (0.0928) R2dC : 0.068 R2C : 0.0684
β3 : 0.783 (0.0942) R2dE : 0.0995 R2E : 0.0344
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.155 (0.0779) R2dN8 : 0.00822 R2N8 : 0.00116
σ : 0.663
deviance : 202.88
__
_____
C
peak time of C : 5.8
E
wheather : temperature
threshold : 31.6
memory length : 1186
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
199.5 0.664 6.25 -1.39 0.654 0.291 1.03 4.01 -0.168 5.12 31.2 1193 -- --
202.37 0.663 6.32 -1.99 0.705 0.724 1.07 -- -0.164 5.03 32.57 1224 -- --
201.44 0.661 6.25 -1.37 0.676 0.305 -- 4.2 -0.166 5.72 31.3 1180 -- --
202.88 0.663 6.33 -2.12 0.663 0.783 -- -- -0.155 5.8 31.6 1186 -- --
224.67 0.698 6.25 -1.32 -- 0.321 -- 4.45 -0.143 -- 31.31 1195 -- --
227.78 0.708 6.37 -1.88 0.704 -- 1.43 -- -0.315 4.48 -- -- -- --
232.36 0.714 6.37 -1.89 0.733 -- -- -- -0.323 5.13 -- -- -- --
226.26 0.701 6.34 -2.09 -- 0.812 -- -- -0.14 -- 31.39 1198 -- --
313.98 0.825 6.3 -- 0.678 0.502 -- -- -0.00632 5.58 31.9 1156 -- --
260.51 0.754 6.38 -1.86 -- -- -- -- -0.304 -- -- -- -- --
326.22 0.845 6.32 -- 0.7 -- -- -- -0.112 5.22 -- -- -- --
336.77 0.855 6.3 -- -- 0.543 -- -- 0.0197 -- 32 1186 -- --
351.88 0.876 6.33 -- -- -- -- -- -0.0975 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 191.68 precipitation 0.1 43200 > th dose dependent rect. 21 2
2 191.71 precipitation 0.1 43200 > th dose independent rect. 21 2
3 191.80 precipitation 0.1 43200 < th dose independent rect. 21 2
4 191.80 precipitation 0.1 43200 < th dose dependent rect. 21 2
11 192.70 temperature 20.0 90 > th dose independent rect. 3 16
12 192.81 temperature 20.0 720 > th dose dependent rect. 18 6
13 193.20 temperature 20.0 270 > th dose dependent rect. 1 6
20 193.51 temperature 20.0 720 > th dose dependent rect. 17 12
29 193.78 temperature 20.0 270 > th dose independent rect. 3 2
34 194.04 temperature 20.0 720 > th dose dependent rect. 21 2
38 194.09 temperature 20.0 270 > th dose dependent rect. 3 2
42 194.42 precipitation 0.1 43200 > th dose dependent rect. 20 5
44 194.44 wind 3.0 43200 > th dose dependent rect. 24 1
47 194.77 temperature 20.0 90 > th dose independent rect. 3 6
57 195.00 atmosphere 1000.0 90 > th dose independent rect. 19 8
58 195.06 temperature 20.0 270 > th dose dependent rect. 2 4
70 195.40 precipitation 0.1 4320 < th dose independent rect. 20 1
71 195.40 precipitation 0.1 4320 < th dose dependent rect. 20 1
75 195.68 precipitation 0.1 4320 > th dose independent rect. 20 1
76 195.69 precipitation 0.1 4320 > th dose independent rect. 20 6
78 195.80 precipitation 0.1 4320 < th dose independent rect. 20 6
79 195.80 precipitation 0.1 4320 < th dose dependent rect. 20 6
84 196.03 precipitation 0.1 4320 < th dose independent rect. 20 3
85 196.03 precipitation 0.1 4320 < th dose dependent rect. 20 3
86 196.06 precipitation 0.1 4320 > th dose independent rect. 20 3
96 196.11 temperature 15.0 90 > th dose independent rect. 19 8
98 196.20 humidity 70.0 720 > th dose independent rect. 18 9
105 196.30 temperature 20.0 720 > th dose dependent sin 14 NA
121 196.69 temperature 25.0 720 > th dose dependent rect. 18 1
128 196.82 temperature 25.0 720 > th dose independent rect. 18 6
139 197.14 atmosphere 995.0 90 > th dose dependent rect. 19 8
141 197.16 wind 7.0 4320 > th dose dependent rect. 21 1
147 197.34 radiation 30.0 90 < th dose independent rect. 3 8
149 197.39 precipitation 0.1 4320 > th dose dependent rect. 20 6
158 197.55 precipitation 0.1 4320 > th dose dependent rect. 21 2
159 197.61 temperature 20.0 270 > th dose independent rect. 1 6
198 198.20 wind 3.0 4320 > th dose dependent rect. 24 1
222 198.44 temperature 30.0 90 < th dose independent rect. 19 8
223 198.44 humidity 50.0 90 > th dose independent rect. 19 8
226 198.44 radiation 1.0 90 < th dose independent rect. 19 8
231 198.44 temperature 10.0 90 > th dose independent rect. 3 16
232 198.44 atmosphere 1015.0 90 < th dose independent rect. 3 16
233 198.44 radiation 10.0 90 < th dose dependent rect. 19 8
242 198.51 wind 9.0 90 < th dose independent rect. 19 8
247 198.65 atmosphere 1000.0 10 > th dose independent rect. 20 8
267 198.95 wind 7.0 4320 > th dose independent rect. 21 4
268 198.96 temperature 30.0 720 < th dose dependent rect. 18 9
270 198.97 radiation 1.0 720 > th dose independent rect. 18 11
278 199.10 temperature 15.0 90 > th dose independent rect. 9 18
279 199.11 wind 7.0 4320 > th dose dependent rect. 21 4
283 199.19 humidity 60.0 90 > th dose dependent rect. 3 8
289 199.23 radiation 1.0 720 > th dose independent rect. 18 1
295 199.23 atmosphere 1005.0 90 > th dose independent rect. 3 6
311 199.41 radiation 20.0 1440 > th dose dependent rect. 16 15
315 199.44 radiation 40.0 90 < th dose dependent rect. 3 8
332 199.55 precipitation 0.1 90 < th dose independent rect. 3 16
333 199.55 radiation 20.0 1440 > th dose dependent rect. 16 1
347 199.55 precipitation 0.1 90 < th dose dependent rect. 3 16
353 199.67 precipitation 0.1 90 < th dose independent rect. 19 8
354 199.67 precipitation 0.1 90 < th dose dependent rect. 19 8
361 199.76 radiation 40.0 90 < th dose independent rect. 3 16
370 199.84 wind 5.0 43200 < th dose independent rect. 24 1
373 199.85 humidity 70.0 1440 > th dose independent rect. 18 13
383 199.89 humidity 50.0 90 > th dose dependent rect. 19 8
392 200.00 humidity 70.0 1440 > th dose independent rect. 18 5
397 200.02 humidity 70.0 1440 > th dose independent rect. 18 2
405 200.07 temperature 30.0 720 < th dose independent rect. 17 10
408 200.09 wind 5.0 4320 > th dose independent rect. 24 1
409 200.09 wind 9.0 90 < th dose independent rect. 3 16
410 200.10 humidity 80.0 720 < th dose dependent rect. 18 3
422 200.22 wind 5.0 4320 < th dose independent rect. 24 1
424 200.23 humidity 50.0 90 > th dose dependent rect. 3 6
427 200.27 wind 5.0 43200 > th dose independent rect. 24 1
429 200.30 humidity 50.0 4320 > th dose independent rect. 13 1
446 200.40 wind 5.0 43200 > th dose independent rect. 20 18
448 200.41 radiation 20.0 1440 > th dose independent rect. 16 15
461 200.50 wind 5.0 43200 > th dose independent rect. 23 15
464 200.54 wind 9.0 90 < th dose independent rect. 9 18
465 200.55 wind 5.0 43200 < th dose independent rect. 20 18
467 200.57 wind 5.0 43200 < th dose independent rect. 23 15
472 200.60 humidity 70.0 720 < th dose independent rect. 18 2
496 200.68 radiation 1.0 43200 < th dose dependent rect. 21 7
497 200.69 atmosphere 995.0 90 > th dose independent rect. 3 16
512 200.77 atmosphere 1010.0 90 < th dose independent rect. 3 6
520 200.81 wind 5.0 43200 > th dose independent rect. 10 4
526 200.84 wind 5.0 4320 > th dose dependent rect. 23 3
530 200.87 radiation 40.0 90 < th dose dependent rect. 3 6
543 200.94 wind 7.0 4320 < th dose independent rect. 21 4
545 200.95 wind 5.0 43200 > th dose independent rect. 8 6
558 200.99 temperature 30.0 720 < th dose dependent rect. 18 3
568 201.04 radiation 20.0 1440 > th dose independent rect. 16 1
583 201.05 wind 5.0 43200 < th dose independent rect. 8 6
595 201.11 temperature 30.0 1440 > th dose independent rect. 16 3
597 201.11 humidity 50.0 4320 > th dose independent rect. 13 4
613 201.12 wind 5.0 43200 > th dose independent rect. 20 6
616 201.13 atmosphere 1005.0 10 > th dose independent rect. 4 5
618 201.13 temperature 25.0 4320 > th dose dependent rect. 22 1
622 201.15 wind 7.0 4320 > th dose independent rect. 23 3
638 201.22 wind 7.0 4320 < th dose independent rect. 21 6
644 201.24 wind 5.0 43200 < th dose independent rect. 10 4
658 201.31 wind 7.0 43200 < th dose independent rect. 5 5
660 201.32 wind 5.0 43200 > th dose independent rect. 11 1
661 201.32 temperature 15.0 10 > th dose independent rect. 20 8
672 201.37 temperature 10.0 4320 > th dose dependent rect. 5 2
686 201.40 temperature 30.0 1440 < th dose independent rect. 16 4
687 201.40 temperature 30.0 1440 < th dose independent rect. 16 7
691 201.41 radiation 10.0 14400 < th dose dependent rect. 9 1
693 201.41 temperature 30.0 90 < th dose dependent rect. 19 8
708 201.45 temperature 30.0 1440 < th dose independent rect. 16 13
712 201.46 temperature 30.0 4320 < th dose dependent rect. 5 2
722 201.48 radiation 10.0 14400 < th dose dependent rect. 9 3
726 201.49 temperature 30.0 1440 < th dose independent rect. 16 15
727 201.50 wind 5.0 43200 < th dose independent rect. 11 1
739 201.55 wind 5.0 43200 < th dose independent rect. 20 6
750 201.58 radiation 30.0 1440 > th dose independent rect. 15 17
753 201.59 humidity 60.0 90 > th dose independent rect. 3 6
755 201.59 radiation 10.0 14400 < th dose dependent rect. 15 2
775 201.61 temperature 20.0 4320 > th dose dependent rect. 5 1
778 201.62 wind 9.0 90 < th dose independent rect. 3 6
779 201.62 temperature 10.0 90 > th dose independent rect. 3 6
782 201.62 atmosphere 995.0 90 > th dose independent rect. 3 6
789 201.63 wind 9.0 90 < th dose dependent rect. 19 8
796 201.67 wind 7.0 43200 > th dose independent rect. 5 5
801 201.69 wind 9.0 90 < th dose dependent rect. 3 6
812 201.71 radiation 10.0 14400 < th dose dependent rect. 9 9
815 201.72 temperature 30.0 4320 < th dose dependent rect. 22 1
819 201.72 radiation 10.0 14400 < th dose dependent rect. 9 14
845 201.77 precipitation 0.1 43200 > th dose dependent rect. 20 17
852 201.78 temperature 10.0 4320 > th dose dependent rect. 18 13
861 201.80 temperature 10.0 4320 > th dose dependent rect. 22 1
883 201.83 temperature 10.0 4320 > th dose dependent rect. 16 15
895 201.86 temperature 30.0 4320 < th dose dependent rect. 18 13
921 201.89 temperature 30.0 1440 > th dose dependent rect. 16 22
924 201.90 temperature 30.0 1440 > th dose dependent rect. 13 1
937 201.95 temperature 20.0 4320 > th dose dependent rect. 3 4
943 201.96 temperature 30.0 90 < th dose independent rect. 3 6
951 201.97 temperature 10.0 4320 > th dose dependent rect. 21 10
952 201.97 temperature 30.0 4320 < th dose dependent rect. 21 10
964 202.00 radiation 20.0 1440 < th dose independent rect. 16 1
974 202.02 wind 7.0 43200 > th dose independent rect. 20 14