BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0677700 Os04g0677700|009-071-A09
         (156 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0677700  Conserved hypothetical protein                      312   8e-86
Os10g0494800  Similar to Katanin p80 WD40-containing subunit...   134   4e-32
Os01g0780400  WD40-like domain containing protein                 119   9e-28
Os01g0531300  Conserved hypothetical protein                       97   4e-21

>Os04g0677700 Conserved hypothetical protein
          Length = 156

 Score =  312 bits (799), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 156/156 (100%), Positives = 156/156 (100%)

Query: 1   DVLSVLMEQHELFLSSTRSRLTKLQIVHQMWQRNDIRGIIAAMEKMSDHAVSADVASVLM 60
           DVLSVLMEQHELFLSSTRSRLTKLQIVHQMWQRNDIRGIIAAMEKMSDHAVSADVASVLM
Sbjct: 1   DVLSVLMEQHELFLSSTRSRLTKLQIVHQMWQRNDIRGIIAAMEKMSDHAVSADVASVLM 60

Query: 61  EKSETITLDLCTVILPVLTDLLESKTDRHLGVSLELLVKLVRTFGSVIHSTVSAGPSSVG 120
           EKSETITLDLCTVILPVLTDLLESKTDRHLGVSLELLVKLVRTFGSVIHSTVSAGPSSVG
Sbjct: 61  EKSETITLDLCTVILPVLTDLLESKTDRHLGVSLELLVKLVRTFGSVIHSTVSAGPSSVG 120

Query: 121 VDLQAEQRYYFSQTVLVCYSILLELSSYYVILLEYY 156
           VDLQAEQRYYFSQTVLVCYSILLELSSYYVILLEYY
Sbjct: 121 VDLQAEQRYYFSQTVLVCYSILLELSSYYVILLEYY 156



>Os10g0494800 Similar to Katanin p80 WD40-containing subunit B1 (Katanin p80
           subunit B1) (p80 katanin)
          Length = 875

 Score =  134 bits (336), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 8/154 (5%)

Query: 1   DVLSVLMEQHELFLSSTRSRLTKLQIVHQMWQRNDIRGIIAAMEKMSDHAVSADVASVLM 60
           D ++ LME H+ F+ + +SRLTKL++V++ W  ND++G I A  ++ D  V+AD+ SVLM
Sbjct: 700 DDIADLMENHQEFIHAVKSRLTKLEVVYRCWHNNDVKGSIDATRRIQDLDVTADIISVLM 759

Query: 61  EKSETITLDLCTVILPVLTDLLE-SKTDRHLGVSLELLVKLVRTFGSVIHSTVSAGPSSV 119
           E   +ITLD+CT +LP+ + +LE S  DRHL V+LE+++KLV++FGS I S VS+ P  V
Sbjct: 760 ENDNSITLDICTCVLPLASSVLEKSSYDRHLKVALEMILKLVKSFGSTISSAVSSTP-PV 818

Query: 120 GVDLQAEQRYYFSQTVLVCYSILLELSSYYVILL 153
           GVD++AEQR      +  C    LEL   + +L 
Sbjct: 819 GVDIEAEQR------LNRCNLCFLELIKVHSVLF 846



>Os01g0780400 WD40-like domain containing protein
          Length = 838

 Score =  119 bits (298), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 63/123 (51%), Positives = 88/123 (71%), Gaps = 1/123 (0%)

Query: 6   LMEQHELFLSSTRSRLTKLQIVHQMWQRNDIRGIIAAMEKMSDHAVSADVASVLMEKSET 65
           LM+ H+ F+++ +SRLTKL+++  ++ +N I+G IAA+ K+ D+AV ADV S L  K + 
Sbjct: 672 LMQNHDEFINAVKSRLTKLEMMRHVFDQNGIKGAIAAVAKLPDNAVLADVVSTLKGKLDL 731

Query: 66  ITLDLCTVILPVLTDLLESKTDRHLGVSLELLVKLVRTFGSVIHSTVSAGPSSVGVDLQA 125
             LD+    LPVL  LL SK +RH  VSLELL+ L++ FG VI ST+SA  S+VGVD+QA
Sbjct: 732 FNLDIFLSFLPVLAGLLTSKAERHAIVSLELLLDLIKIFGPVIRSTLSAH-SAVGVDIQA 790

Query: 126 EQR 128
           EQR
Sbjct: 791 EQR 793



>Os01g0531300 Conserved hypothetical protein
          Length = 435

 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/131 (46%), Positives = 85/131 (64%), Gaps = 6/131 (4%)

Query: 1   DVLSVLMEQHELFLSSTRSRLTKLQIVHQM---WQRNDIRGIIAAMEKMSDHAVSADVAS 57
           +V+ V+  + EL+    R+ +  L + H M   + +N I+G IAA+ K+ D+AV ADV S
Sbjct: 268 EVVRVMTGEAELW-RLARAAIPAL-VAHMMRHVFDQNGIKGAIAAVAKLPDNAVQADVVS 325

Query: 58  VLMEKSETITLDLCTVILPVLTDLLESKTDRHLGVSLELLVKLVRTFGSVIHSTVSAGPS 117
            L  K +  +LD+    LPVL  LL SK +RH  VSLELL+ L++ FG VI ST+SA  S
Sbjct: 326 TLKRKLDLFSLDIFLSFLPVLAGLLTSKAERHAIVSLELLLDLIKIFGPVIRSTLSAH-S 384

Query: 118 SVGVDLQAEQR 128
           +VGVD+QAEQR
Sbjct: 385 AVGVDIQAEQR 395



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.134    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,086,355
Number of extensions: 130646
Number of successful extensions: 348
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 4
Length of query: 156
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 64
Effective length of database: 12,232,113
Effective search space: 782855232
Effective search space used: 782855232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)