FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0440000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0115) R2 : 3.45e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00304 (0.0243) R2dN8 : 4.45e-05 R2N8 : 3.45e-05
σ : 0.217
deviance : 21.61
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.41 0.212 2.95 0.118 0.154 -0.158 0.101 -0.324 -0.0121 5.63 89.03 249 -- --
20.57 0.211 2.94 0.105 0.15 -0.16 -0.0675 -- -0.0147 5.42 89 248 -- --
20.43 0.211 2.95 0.116 0.151 -0.153 -- -0.268 -0.0124 5.52 89 241 -- --
20.58 0.211 2.94 0.106 0.153 -0.167 -- -- -0.0149 5.56 89 248 -- --
21.15 0.214 2.94 0.103 -- -0.0278 -- -0.258 0.00958 -- 88 141 -- --
21.09 0.215 2.94 0.0865 0.0689 -- -0.172 -- 0.0104 5.14 -- -- -- --
21.13 0.215 2.94 0.0871 0.0727 -- -- -- 0.0114 6.39 -- -- -- --
21.25 0.215 2.94 0.104 -- -0.0772 -- -- 0.00314 -- 92 49 -- --
20.87 0.213 2.95 -- 0.144 -0.152 -- -- -0.0247 5.58 89.34 240 -- --
21.4 0.216 2.94 0.089 -- -- -- -- 0.0129 -- -- -- -- --
21.33 0.216 2.94 -- 0.0739 -- -- -- 0.00167 6.32 -- -- -- --
21.5 0.216 2.95 -- -- -0.0601 -- -- -0.00714 -- 91.52 63 -- --
21.61 0.217 2.94 -- -- -- -- -- 0.00304 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 13.25 wind 3.0 30 < th dose dependent rect. 2 1
5 13.35 temperature 15.0 30 > th dose dependent rect. 2 1
6 13.36 wind 3.0 30 < th dose independent rect. 2 1
7 13.36 humidity 80.0 30 > th dose independent rect. 2 1
10 13.39 wind 9.0 30 < th dose independent rect. 2 1
11 13.39 temperature 10.0 30 > th dose independent rect. 2 1
13 13.39 temperature 30.0 30 < th dose independent rect. 2 1
14 13.39 humidity 50.0 30 > th dose independent rect. 2 1
17 13.39 atmosphere 995.0 30 > th dose independent rect. 2 1
18 13.39 atmosphere 1010.0 30 < th dose independent rect. 2 1
20 13.39 radiation 1.0 30 < th dose independent rect. 2 1
25 13.39 precipitation 0.1 30 < th dose independent rect. 2 1
26 13.39 temperature 10.0 30 > th dose independent rect. 3 23
27 13.39 humidity 50.0 30 > th dose dependent rect. 2 1
30 13.39 radiation 1.0 30 < th dose dependent rect. 2 1
35 13.39 precipitation 0.1 30 < th dose dependent rect. 2 1
40 13.41 atmosphere 1005.0 30 > th dose dependent rect. 2 1
42 13.42 atmosphere 995.0 30 > th dose dependent rect. 2 1
45 13.45 atmosphere 1005.0 30 > th dose independent rect. 2 1
48 13.50 atmosphere 1015.0 30 < th dose dependent rect. 2 1
49 13.66 temperature 30.0 30 < th dose dependent rect. 2 1
61 14.18 wind 1.0 30 > th dose independent rect. 2 1
67 14.38 wind 9.0 30 < th dose independent rect. 3 23
111 17.89 atmosphere 995.0 30 > th dose independent rect. 3 23
117 18.43 precipitation 0.1 30 < th dose independent rect. 3 23
119 18.43 precipitation 0.1 30 < th dose dependent rect. 3 23
133 19.03 humidity 90.0 90 < th dose independent rect. 1 2
134 19.05 wind 1.0 30 > th dose dependent rect. 2 1
152 19.31 atmosphere 1015.0 30 < th dose independent rect. 3 23
162 19.36 wind 9.0 1440 < th dose independent rect. 3 1
163 19.36 temperature 10.0 1440 > th dose independent rect. 3 1
166 19.36 temperature 30.0 1440 < th dose independent rect. 3 1
170 19.36 humidity 50.0 1440 > th dose independent rect. 3 1
179 19.36 atmosphere 995.0 1440 > th dose independent rect. 3 1
180 19.36 radiation 1.0 1440 < th dose independent rect. 3 1
201 19.36 temperature 10.0 1440 > th dose independent rect. 4 23
205 19.36 radiation 1.0 1440 < th dose dependent rect. 3 1
226 19.39 atmosphere 1015.0 1440 < th dose independent rect. 3 1
281 19.54 humidity 90.0 90 < th dose independent rect. 1 4
287 19.55 wind 9.0 30 < th dose dependent rect. 3 23
328 19.69 temperature 25.0 10 < th dose independent rect. 24 3
329 19.69 humidity 50.0 30 > th dose independent rect. 3 23
382 19.77 temperature 25.0 90 > th dose dependent rect. 1 4
456 19.83 humidity 50.0 30 > th dose dependent rect. 3 23
489 19.93 radiation 40.0 10 < th dose dependent rect. 3 23
490 19.93 radiation 20.0 30 < th dose dependent rect. 3 23
538 19.95 wind 9.0 720 < th dose independent rect. 3 8
539 19.95 temperature 15.0 720 > th dose independent rect. 11 16
574 19.98 temperature 10.0 720 > th dose independent rect. 3 8
576 19.98 atmosphere 995.0 720 > th dose independent rect. 3 8
578 19.98 radiation 10.0 30 < th dose independent rect. 3 23
580 19.99 atmosphere 1015.0 720 < th dose independent rect. 3 8
593 20.01 wind 9.0 720 < th dose independent rect. 19 8
594 20.01 radiation 40.0 720 < th dose independent rect. 15 8
601 20.02 temperature 10.0 720 > th dose independent rect. 15 8
603 20.02 temperature 10.0 720 > th dose independent rect. 19 8
604 20.02 temperature 30.0 720 < th dose independent rect. 19 8
605 20.02 humidity 50.0 720 > th dose independent rect. 19 8
606 20.02 atmosphere 995.0 720 > th dose independent rect. 19 8
607 20.02 radiation 1.0 720 < th dose independent rect. 19 8
612 20.02 temperature 10.0 720 > th dose independent rect. 3 16
613 20.02 temperature 10.0 720 > th dose independent rect. 23 16
617 20.02 radiation 1.0 720 < th dose dependent rect. 19 8
623 20.03 temperature 10.0 720 > th dose independent rect. 7 8
624 20.03 atmosphere 1015.0 720 < th dose independent rect. 7 8
625 20.03 radiation 30.0 30 < th dose independent rect. 3 8
627 20.03 wind 9.0 720 < th dose independent rect. 23 16
628 20.03 temperature 10.0 720 > th dose independent rect. 15 16
635 20.04 wind 9.0 720 < th dose independent rect. 15 16
640 20.04 humidity 50.0 30 > th dose dependent rect. 3 8
641 20.05 wind 9.0 720 < th dose independent rect. 7 8
661 20.07 wind 1.0 10 < th dose independent rect. 15 12
669 20.07 wind 9.0 30 < th dose dependent rect. 3 8
670 20.07 temperature 10.0 30 > th dose dependent rect. 3 23
678 20.08 wind 1.0 10 < th dose independent rect. 17 10
714 20.09 radiation 40.0 90 < th dose independent rect. 11 16
715 20.09 radiation 40.0 720 < th dose independent rect. 15 16
731 20.09 radiation 40.0 30 < th dose dependent rect. 11 16
762 20.11 radiation 40.0 30 < th dose dependent rect. 3 8
780 20.12 atmosphere 1010.0 30 < th dose independent rect. 3 8
800 20.13 wind 9.0 720 < th dose independent rect. 3 16
807 20.14 wind 9.0 720 < th dose independent rect. 15 8
811 20.14 humidity 90.0 270 < th dose independent rect. 22 14
812 20.14 humidity 90.0 270 < th dose independent rect. 22 17
823 20.15 humidity 60.0 30 > th dose independent rect. 3 8
839 20.16 wind 5.0 30 < th dose independent rect. 3 8
842 20.16 temperature 10.0 30 > th dose independent rect. 3 8
844 20.16 temperature 30.0 90 < th dose independent rect. 3 8
846 20.16 atmosphere 995.0 30 > th dose independent rect. 3 8
848 20.16 wind 9.0 720 < th dose independent rect. 3 12
849 20.16 atmosphere 995.0 720 > th dose independent rect. 3 12
851 20.16 temperature 10.0 30 > th dose independent rect. 11 16
853 20.16 atmosphere 1015.0 30 < th dose independent rect. 11 16
857 20.16 wind 3.0 30 < th dose dependent rect. 22 5
874 20.17 atmosphere 1015.0 720 < th dose independent rect. 3 16
900 20.18 precipitation 0.1 30 < th dose independent rect. 11 16
913 20.18 precipitation 0.1 30 < th dose dependent rect. 11 16
919 20.19 wind 9.0 30 < th dose independent rect. 11 16
937 20.20 precipitation 0.1 30 < th dose independent rect. 3 8
938 20.20 temperature 15.0 720 > th dose independent rect. 3 12
939 20.20 atmosphere 1015.0 720 < th dose independent rect. 3 12
948 20.20 precipitation 0.1 30 < th dose dependent rect. 3 8
956 20.21 radiation 40.0 90 < th dose independent rect. 3 22
973 20.22 radiation 40.0 720 < th dose independent rect. 15 12
981 20.22 temperature 10.0 30 > th dose dependent rect. 3 8
993 20.23 temperature 10.0 720 > th dose independent rect. 15 12
995 20.23 atmosphere 995.0 720 > th dose independent rect. 23 16