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Os11g0573700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-directed DNA polymerase (Reverse transcriptase) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.9 (0.026) R2 : 0.689
β1 : 1.67 (0.0951) R2dD : 0.217 R2D : 0.129
β2 : 1.51 (0.0631) R2dC : 0.394 R2C : 0.354
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.79 (0.0555) R2dN8 : 0.186 R2N8 : 0.0737
σ : 0.489
deviance : 108.87
__
_____
C
peak time of C : 21.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
99.01 0.468 6.9 1.73 1.88 0.701 -0.049 -0.475 0.827 21.7 80.04 800 -- --
99.34 0.464 6.9 1.7 1.88 0.703 0.149 -- 0.82 21.7 80.2 800 -- --
99.02 0.463 6.9 1.73 1.88 0.699 -- -0.439 0.826 21.7 80.15 800 -- --
99.42 0.464 6.9 1.69 1.87 0.692 -- -- 0.819 21.7 80.34 800 -- --
217.25 0.69 6.86 1.69 -- 0.499 -- 0.19 0.786 -- 80.15 800 -- --
108.79 0.489 6.9 1.67 1.51 -- 0.143 -- 0.791 21.9 -- -- -- --
108.87 0.489 6.9 1.67 1.51 -- -- -- 0.79 21.9 -- -- -- --
210.71 0.679 6.86 1.74 -- 0.565 -- -- 0.777 -- 77 3031 -- --
170.26 0.608 6.92 -- 1.57 0.852 -- -- 0.675 21.6 83 1788 -- --
245.99 0.733 6.86 1.68 -- -- -- -- 0.79 -- -- -- -- --
181.96 0.631 6.94 -- 1.52 -- -- -- 0.605 22 -- -- -- --
290.19 0.796 6.9 -- -- 0.524 -- -- 0.585 -- 77 3031 -- --
320.64 0.836 6.9 -- -- -- -- -- 0.604 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.12 temperature 10.0 270 > th dose dependent rect. 22 10
2 94.66 temperature 20.0 270 > th dose dependent rect. 2 6
13 96.08 precipitation 0.1 270 < th dose independent rect. 16 23
14 96.08 precipitation 0.1 270 < th dose dependent rect. 16 23
19 96.67 temperature 25.0 90 > th dose independent rect. 3 5
22 96.91 humidity 80.0 270 > th dose independent rect. 11 20
29 97.15 temperature 20.0 270 > th dose independent rect. 23 9
39 97.33 precipitation 0.1 30 < th dose independent rect. 20 19
41 97.33 precipitation 0.1 30 < th dose dependent rect. 20 19
46 97.40 radiation 40.0 1440 < th dose dependent rect. 21 8
52 97.56 humidity 70.0 270 > th dose dependent rect. 11 20
53 97.58 wind 1.0 14400 > th dose independent rect. 1 2
57 97.72 radiation 20.0 30 < th dose dependent rect. 6 14
60 97.74 humidity 50.0 270 > th dose dependent rect. 13 18
62 97.80 wind 9.0 30 < th dose independent rect. 15 5
64 97.82 humidity 80.0 270 > th dose independent rect. 22 10
69 97.88 temperature 10.0 1440 > th dose independent rect. 16 5
72 97.88 temperature 10.0 1440 > th dose independent rect. 21 19
81 97.91 radiation 10.0 30 < th dose independent rect. 6 14
82 97.91 humidity 80.0 720 < th dose independent rect. 10 17
83 97.91 temperature 20.0 270 > th dose independent rect. 12 20
85 97.92 temperature 10.0 30 > th dose independent rect. 15 5
87 97.92 atmosphere 1010.0 30 < th dose independent rect. 15 5
89 97.92 temperature 10.0 30 > th dose independent rect. 20 19
90 97.92 atmosphere 995.0 30 > th dose independent rect. 20 19
91 97.93 humidity 50.0 10 > th dose dependent rect. 15 5
92 97.95 humidity 80.0 720 > th dose independent rect. 10 15
107 97.99 humidity 80.0 720 < th dose independent rect. 10 21
124 98.06 radiation 40.0 30 < th dose independent rect. 15 5
125 98.06 precipitation 0.1 10 < th dose independent rect. 15 5
129 98.06 precipitation 0.1 10 < th dose dependent rect. 15 5
138 98.10 wind 1.0 14400 < th dose independent rect. 1 2
139 98.10 atmosphere 1015.0 30 < th dose independent rect. 20 19
145 98.12 radiation 1.0 270 < th dose dependent rect. 11 7
157 98.17 temperature 20.0 270 > th dose independent rect. 13 18
165 98.22 wind 1.0 10 > th dose independent rect. 15 5
175 98.26 temperature 30.0 30 < th dose independent rect. 20 19
176 98.26 radiation 40.0 10 < th dose dependent rect. 6 14
177 98.27 precipitation 0.1 270 < th dose independent rect. 17 10
178 98.27 precipitation 0.1 270 < th dose dependent rect. 17 10
180 98.29 radiation 40.0 270 < th dose independent rect. 12 19
195 98.40 atmosphere 1015.0 10 < th dose dependent rect. 15 5
198 98.41 temperature 25.0 30 < th dose independent rect. 13 7
200 98.42 radiation 1.0 270 < th dose independent rect. 11 7
202 98.43 wind 9.0 270 < th dose independent rect. 3 14
204 98.43 temperature 20.0 10 > th dose dependent rect. 24 9
226 98.53 precipitation 0.1 270 < th dose independent rect. 8 14
228 98.53 wind 9.0 30 < th dose independent rect. 20 19
229 98.53 precipitation 0.1 270 < th dose dependent rect. 8 14
234 98.56 humidity 80.0 10 < th dose independent rect. 9 6
235 98.56 humidity 50.0 30 > th dose independent rect. 20 19
236 98.56 humidity 60.0 10 > th dose dependent rect. 13 7
241 98.59 radiation 1.0 30 > th dose independent rect. 9 6
244 98.60 humidity 80.0 30 > th dose independent rect. 6 14
252 98.61 radiation 40.0 90 < th dose dependent rect. 13 20
254 98.62 radiation 40.0 10 < th dose independent rect. 15 18
262 98.63 radiation 40.0 270 < th dose dependent rect. 15 1
270 98.65 temperature 30.0 270 < th dose independent rect. 7 6
272 98.66 temperature 30.0 270 < th dose independent rect. 8 4
277 98.68 humidity 80.0 720 > th dose independent rect. 4 21
301 98.78 humidity 50.0 270 > th dose dependent rect. 21 11
302 98.80 wind 1.0 270 > th dose independent rect. 17 10
314 98.85 atmosphere 1015.0 270 < th dose dependent rect. 15 1
326 98.89 radiation 1.0 720 < th dose dependent rect. 10 15
335 98.91 humidity 50.0 270 > th dose independent rect. 13 18
340 98.91 humidity 70.0 10 > th dose dependent rect. 6 14
343 98.92 humidity 80.0 10 < th dose independent rect. 23 16
357 98.95 humidity 60.0 270 > th dose independent rect. 7 6
372 98.98 temperature 30.0 10 < th dose dependent rect. 13 7
381 99.00 wind 1.0 270 > th dose independent rect. 7 6
384 99.00 radiation 40.0 30 < th dose dependent rect. 13 7
387 99.01 radiation 40.0 270 < th dose independent rect. 8 3
398 99.03 temperature 30.0 90 < th dose independent rect. 20 17
400 99.03 wind 9.0 30 < th dose dependent rect. 15 5
408 99.04 radiation 1.0 720 < th dose dependent rect. 7 18
409 99.05 radiation 1.0 720 < th dose independent rect. 10 15
413 99.07 humidity 50.0 270 > th dose independent rect. 15 1
419 99.09 temperature 10.0 10 > th dose independent rect. 9 6
421 99.09 atmosphere 995.0 10 > th dose independent rect. 9 6
422 99.09 atmosphere 1015.0 10 < th dose independent rect. 9 6
423 99.09 precipitation 0.1 10 < th dose independent rect. 9 6
425 99.09 wind 7.0 270 < th dose independent rect. 17 10
426 99.09 wind 9.0 30 < th dose independent rect. 15 18
427 99.09 temperature 10.0 10 > th dose independent rect. 15 18
429 99.09 precipitation 0.1 10 < th dose dependent rect. 9 6
438 99.12 temperature 30.0 270 < th dose independent rect. 9 2
444 99.12 humidity 80.0 10 < th dose independent rect. 2 13
445 99.12 radiation 1.0 720 < th dose independent rect. 7 18
449 99.13 wind 9.0 270 < th dose independent rect. 15 1
457 99.14 temperature 20.0 270 > th dose independent rect. 5 1
458 99.14 humidity 60.0 270 > th dose independent rect. 8 4
467 99.16 humidity 80.0 720 < th dose independent rect. 11 2
469 99.16 temperature 10.0 1440 > th dose independent rect. 10 6
472 99.16 temperature 30.0 30 < th dose independent rect. 9 6
475 99.16 temperature 10.0 1440 > th dose independent rect. 16 18
483 99.18 wind 1.0 30 > th dose independent rect. 9 6
487 99.19 precipitation 0.1 90 < th dose independent rect. 19 10
490 99.19 precipitation 0.1 4320 > th dose dependent rect. 16 1
491 99.19 radiation 40.0 270 < th dose dependent rect. 13 4
492 99.19 precipitation 0.1 90 < th dose dependent rect. 19 10
498 99.21 humidity 80.0 720 < th dose independent sin 19 NA
512 99.23 radiation 1.0 270 > th dose independent rect. 7 6
519 99.25 temperature 10.0 270 > th dose independent rect. 17 10
520 99.25 radiation 20.0 270 < th dose independent rect. 17 10
523 99.25 temperature 10.0 270 > th dose independent rect. 3 14
524 99.25 atmosphere 1015.0 270 < th dose independent rect. 3 14
538 99.28 radiation 40.0 270 < th dose independent rect. 12 5
540 99.28 humidity 80.0 720 > th dose independent rect. 21 22
544 99.29 humidity 80.0 720 > th dose independent sin 19 NA
553 99.30 humidity 80.0 90 > th dose independent rect. 23 21
556 99.31 temperature 10.0 270 > th dose independent rect. 15 1
558 99.31 atmosphere 1010.0 270 < th dose independent rect. 15 1
560 99.31 precipitation 0.1 270 < th dose independent rect. 15 1
564 99.31 temperature 10.0 270 > th dose independent rect. 16 23
565 99.31 precipitation 0.1 270 < th dose dependent rect. 15 1
578 99.33 wind 9.0 270 < th dose independent rect. 13 18
598 99.36 wind 1.0 14400 < th dose dependent rect. 1 3
599 99.36 radiation 1.0 720 < th dose dependent rect. 7 10
603 99.37 wind 1.0 10 > th dose independent rect. 4 16
617 99.39 wind 9.0 270 < th dose independent rect. 11 22
618 99.39 radiation 40.0 30 < th dose dependent rect. 15 5
624 99.40 humidity 80.0 720 > th dose independent rect. 17 23
628 99.41 wind 1.0 270 > th dose independent rect. 8 14
649 99.44 precipitation 0.1 270 < th dose independent rect. 7 6
651 99.44 precipitation 0.1 270 < th dose dependent rect. 7 6
653 99.45 radiation 10.0 1440 < th dose independent rect. 21 8
654 99.45 temperature 25.0 10 > th dose dependent rect. 4 4
659 99.46 temperature 10.0 270 > th dose independent rect. 7 6
660 99.46 atmosphere 995.0 270 > th dose independent rect. 7 6
661 99.46 atmosphere 1015.0 270 < th dose independent rect. 7 6
663 99.46 temperature 10.0 270 > th dose independent rect. 13 18
670 99.47 atmosphere 995.0 30 > th dose independent rect. 15 5
680 99.48 humidity 80.0 720 < th dose independent rect. 16 22
687 99.50 wind 1.0 270 > th dose independent rect. 9 2
690 99.50 precipitation 0.1 14400 < th dose independent rect. 9 8
695 99.50 precipitation 0.1 14400 < th dose dependent rect. 9 8
697 99.50 precipitation 0.1 14400 > th dose dependent rect. 7 10
698 99.51 humidity 80.0 720 > th dose independent rect. 11 4
711 99.51 precipitation 0.1 14400 > th dose dependent rect. 9 8
713 99.52 humidity 80.0 720 > th dose independent no NA NA
726 99.55 precipitation 0.1 14400 > th dose independent rect. 9 8
737 99.56 radiation 1.0 720 > th dose independent rect. 9 20
743 99.57 radiation 1.0 720 > th dose independent rect. 9 10
756 99.58 wind 1.0 270 > th dose independent rect. 15 1
761 99.58 precipitation 0.1 4320 > th dose dependent rect. 12 5
771 99.60 radiation 1.0 270 < th dose independent rect. 3 15
772 99.60 precipitation 0.1 90 < th dose independent rect. 7 23
773 99.60 precipitation 0.1 90 < th dose dependent rect. 7 23
788 99.63 humidity 50.0 10 > th dose independent rect. 15 5
802 99.64 humidity 80.0 1440 > th dose independent rect. 11 1
804 99.64 temperature 20.0 270 > th dose independent rect. 3 15
807 99.65 precipitation 0.1 14400 > th dose independent rect. 7 11
813 99.66 wind 1.0 10 > th dose independent rect. 15 18
818 99.67 precipitation 0.1 14400 < th dose independent rect. 7 11
823 99.67 precipitation 0.1 14400 < th dose dependent rect. 7 11
826 99.68 wind 9.0 10 < th dose independent rect. 9 6
830 99.68 wind 9.0 270 < th dose independent rect. 12 20
859 99.72 radiation 40.0 270 < th dose dependent rect. 17 10
862 99.73 humidity 80.0 1440 < th dose independent rect. 10 4
866 99.73 wind 1.0 270 > th dose independent rect. 7 20
869 99.74 humidity 80.0 720 < th dose independent rect. 6 21
871 99.75 precipitation 0.1 14400 < th dose independent rect. 12 5
878 99.75 precipitation 0.1 14400 < th dose dependent rect. 12 5
879 99.76 precipitation 0.1 10 < th dose independent rect. 20 10
883 99.76 humidity 80.0 720 < th dose independent rect. 23 23
886 99.76 precipitation 0.1 10 < th dose dependent rect. 20 10
896 99.77 humidity 80.0 720 < th dose independent rect. 2 22
899 99.77 humidity 80.0 720 < th dose independent rect. 20 23
905 99.78 humidity 90.0 270 < th dose independent rect. 15 1
907 99.78 precipitation 0.1 14400 > th dose independent rect. 12 5
918 99.79 humidity 80.0 720 < th dose independent no NA NA
919 99.79 precipitation 0.1 4320 < th dose independent rect. 16 1
925 99.79 humidity 80.0 270 > th dose independent rect. 1 17
929 99.79 precipitation 0.1 4320 < th dose dependent rect. 16 1
977 99.82 humidity 70.0 30 > th dose independent rect. 13 7
992 99.83 radiation 10.0 90 < th dose dependent sin 0 NA
993 99.83 temperature 20.0 720 > th dose dependent rect. 23 2