BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0256400 Os01g0256400|AK107950
(130 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0256400 Similar to Dynein light chain 1 protein DLC-1 ... 195 8e-51
AK062727 122 6e-29
Os06g0492700 Dynein light chain, type 1 family protein 117 2e-27
AK064654 115 6e-27
Os02g0580400 Dynein light chain, type 1 family protein 83 7e-17
Os04g0462600 Dynein light chain, type 1 family protein 82 1e-16
Os01g0555600 Dynein light chain, type 1 family protein 77 4e-15
Os02g0269200 Dynein light chain, type 1 family protein 62 1e-10
>Os01g0256400 Similar to Dynein light chain 1 protein DLC-1 (Fragment)
Length = 130
Score = 195 bits (495), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 99/130 (76%), Positives = 99/130 (76%)
Query: 1 MSDEATXXXXXXXXXXXXXXXSSDVDRKXXXXXXXXXXXXXXXXHKIQLKSADMKEEMRQ 60
MSDEAT SSDVDRK HKIQLKSADMKEEMRQ
Sbjct: 1 MSDEATRRLAGGGGGGAALRASSDVDRKPAAAGSPPPGAAAAAGHKIQLKSADMKEEMRQ 60
Query: 61 EAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRNFGSYVTHETNYFVYFYID 120
EAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRNFGSYVTHETNYFVYFYID
Sbjct: 61 EAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRNFGSYVTHETNYFVYFYID 120
Query: 121 SKAVLLFKSG 130
SKAVLLFKSG
Sbjct: 121 SKAVLLFKSG 130
>AK062727
Length = 91
Score = 122 bits (307), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 68/85 (80%)
Query: 46 KIQLKSADMKEEMRQEAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRNFGS 105
K +K+ADM E+M+ +A +IA A EK +EKDIA YIKKEFDK + PTWHCIVGRNFGS
Sbjct: 7 KAVIKNADMSEDMQTDATEIATQAMEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 66
Query: 106 YVTHETNYFVYFYIDSKAVLLFKSG 130
YVTHET +F+YFY+ A+LLFKSG
Sbjct: 67 YVTHETKHFIYFYLGQVAILLFKSG 91
>Os06g0492700 Dynein light chain, type 1 family protein
Length = 131
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/63 (85%), Positives = 58/63 (92%), Gaps = 1/63 (1%)
Query: 45 HKIQLKSADMKEEMRQEAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRNFG 104
HKIQ+KSA+MKEEMRQEAFDI RVAFEKHTMEKDI EYI KEFDKNHGPTWHCIVG NFG
Sbjct: 62 HKIQIKSANMKEEMRQEAFDIDRVAFEKHTMEKDIVEYI-KEFDKNHGPTWHCIVGHNFG 120
Query: 105 SYV 107
++
Sbjct: 121 LFL 123
>AK064654
Length = 89
Score = 115 bits (289), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 66/85 (77%)
Query: 46 KIQLKSADMKEEMRQEAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRNFGS 105
K +++ADM EEM+Q++ + A A EK+ + KDIA +IKKEFDK + PTWHC VGRNFGS
Sbjct: 5 KAVIRNADMSEEMQQDSVECATQALEKYNIGKDIAAHIKKEFDKKYNPTWHCTVGRNFGS 64
Query: 106 YVTHETNYFVYFYIDSKAVLLFKSG 130
YVTHET +F+YFY+ A+LLFK G
Sbjct: 65 YVTHETKHFIYFYLGQVAILLFKPG 89
>Os02g0580400 Dynein light chain, type 1 family protein
Length = 199
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 47 IQLKSADMKEEMRQEAFDIA--RVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRNFG 104
+++++ADM M++ A +A VA K +A +KKEFD +GP WHCIVG FG
Sbjct: 106 VRVRAADMPLAMQRRAVRLAFDAVAAMPRLDSKRLALALKKEFDATYGPAWHCIVGTGFG 165
Query: 105 SYVTHETNYFVYFYIDSKAVLLFKSG 130
SYVTH F+YF +D VLLF++
Sbjct: 166 SYVTHSVGGFLYFSVDKVYVLLFRTA 191
>Os04g0462600 Dynein light chain, type 1 family protein
Length = 190
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 8/89 (8%)
Query: 47 IQLKSADMKEEMRQEAFDIARVAFEKHTM-----EKDIAEYIKKEFDKNHGPTWHCIVGR 101
+++++ADM +++ A RVA E K +A +KKEFD +GP WHCIVG
Sbjct: 97 VRVRAADMPPALQRRAI---RVALEATAAMPRIDSKRLALALKKEFDTTYGPAWHCIVGT 153
Query: 102 NFGSYVTHETNYFVYFYIDSKAVLLFKSG 130
+FGSYVTH F+YF +D +LLF++
Sbjct: 154 SFGSYVTHSLGGFLYFSVDKLYILLFRTA 182
>Os01g0555600 Dynein light chain, type 1 family protein
Length = 213
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 57/86 (66%), Gaps = 4/86 (4%)
Query: 47 IQLKSADMKEEMRQEAFDIARVA---FEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRNF 103
+++ +ADM M+ AF A+ + +K + + +A +KKEFDK +GPTWHCIVG ++
Sbjct: 120 VKVMAADMSPFMQLHAFRCAKRSHDSLDKFS-SRQLAHDVKKEFDKVYGPTWHCIVGTSY 178
Query: 104 GSYVTHETNYFVYFYIDSKAVLLFKS 129
GS+VTH F+YF +D V+LFK+
Sbjct: 179 GSFVTHARGCFLYFSMDKIIVMLFKT 204
>Os02g0269200 Dynein light chain, type 1 family protein
Length = 99
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 77 KDIAEYIKKEFDKNHGPTWHCIVGRNFGSYVTHETNYFVYFYIDSKAVLLFK 128
+ IA +IK EFDK +G W C+VG NFG + TH + F+YF ++ + LLFK
Sbjct: 38 RAIAGHIKAEFDKRYGVGWQCVVGANFGCFFTHTSGTFIYFSLERLSFLLFK 89
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,891,935
Number of extensions: 93824
Number of successful extensions: 218
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 8
Length of query: 130
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 41
Effective length of database: 12,388,755
Effective search space: 507938955
Effective search space used: 507938955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 150 (62.4 bits)