Os01g0256400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Dynein light chain 1 protein DLC-1 (Fragment).
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Os01g0256400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Dynein light chain 1 protein DLC-1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.15 | 0.157 | 12.2 | 0.525 | 0.151 | -0.439 | 0.0425 | 0.617 | 0.223 | 11 | 25.76 | 98 | -- | -- |
| 11.26 | 0.156 | 12.2 | 0.459 | 0.14 | -0.388 | 0.0773 | -- | 0.207 | 11.1 | 25.7 | 123 | -- | -- |
| 11.16 | 0.156 | 12.2 | 0.529 | 0.149 | -0.443 | -- | 0.661 | 0.222 | 11 | 25.8 | 105 | -- | -- |
| 11.28 | 0.156 | 12.2 | 0.459 | 0.137 | -0.382 | -- | -- | 0.205 | 10.9 | 25.76 | 131 | -- | -- |
| 11.94 | 0.161 | 12.2 | 0.511 | -- | -0.382 | -- | 0.443 | 0.223 | -- | 25.15 | 334 | -- | -- |
| 13.6 | 0.173 | 12.2 | 0.401 | 0.176 | -- | 0.0333 | -- | 0.189 | 7.26 | -- | -- | -- | -- |
| 13.6 | 0.173 | 12.2 | 0.401 | 0.176 | -- | -- | -- | 0.188 | 7.25 | -- | -- | -- | -- |
| 11.97 | 0.161 | 12.2 | 0.457 | -- | -0.339 | -- | -- | 0.214 | -- | 25.06 | 353 | -- | -- |
| 16.61 | 0.19 | 12.2 | -- | 0.133 | -0.283 | -- | -- | 0.146 | 9.31 | 26.5 | 131 | -- | -- |
| 15.25 | 0.182 | 12.2 | 0.404 | -- | -- | -- | -- | 0.191 | -- | -- | -- | -- | -- |
| 17.85 | 0.198 | 12.2 | -- | 0.18 | -- | -- | -- | 0.144 | 7.1 | -- | -- | -- | -- |
| 17.3 | 0.194 | 12.2 | -- | -- | -0.29 | -- | -- | 0.147 | -- | 26.33 | 332 | -- | -- |
| 19.56 | 0.206 | 12.2 | -- | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.41 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 15 |
| 2 | 10.42 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 7 | 10.49 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 20 | 10.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 58 | 10.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 62 | 10.78 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 69 | 10.80 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 75 | 10.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 103 | 10.87 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 22 |
| 104 | 10.87 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 125 | 10.90 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 189 | 10.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 250 | 11.03 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 376 | 11.14 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 387 | 11.15 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 3 |
| 459 | 11.19 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 5 |
| 480 | 11.20 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 15 |
| 516 | 11.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 14 |
| 645 | 11.27 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 665 | 11.27 | temperature | 25 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 669 | 11.28 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 16 |
| 738 | 11.29 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 740 | 11.30 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 9 |
| 815 | 11.32 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 881 | 11.35 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 912 | 11.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 1 |