BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0256400 Os01g0256400|AK107950
(130 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G15930.1 | chr4:9036344-9037825 FORWARD LENGTH=124 140 2e-34
AT5G20110.1 | chr5:6791542-6793253 REVERSE LENGTH=210 85 1e-17
AT1G23220.1 | chr1:8242614-8244136 FORWARD LENGTH=130 82 1e-16
AT4G27360.1 | chr4:13694032-13694517 FORWARD LENGTH=104 79 6e-16
AT3G16120.1 | chr3:5465035-5465395 FORWARD LENGTH=94 67 3e-12
>AT4G15930.1 | chr4:9036344-9037825 FORWARD LENGTH=124
Length = 123
Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 64/82 (78%), Positives = 75/82 (91%)
Query: 49 LKSADMKEEMRQEAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRNFGSYVT 108
+KSADMK++M++EA +IA AFEK+++EKDIAE IKKEFDK HG TWHCIVGRNFGSYVT
Sbjct: 42 IKSADMKDDMQKEAIEIAISAFEKYSVEKDIAENIKKEFDKKHGATWHCIVGRNFGSYVT 101
Query: 109 HETNYFVYFYIDSKAVLLFKSG 130
HETN+FVYFY+D KAVLLFKSG
Sbjct: 102 HETNHFVYFYLDQKAVLLFKSG 123
>AT5G20110.1 | chr5:6791542-6793253 REVERSE LENGTH=210
Length = 209
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 58/86 (67%), Gaps = 4/86 (4%)
Query: 47 IQLKSADMKEEMRQEAFDIARV---AFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRNF 103
+++ +ADM M+ AF AR+ + EK + K +A +KKEFDK +GP WHCIVG +F
Sbjct: 117 VRILAADMPGFMQAHAFRCARMTLDSLEKFS-SKHMAFNLKKEFDKGYGPAWHCIVGSSF 175
Query: 104 GSYVTHETNYFVYFYIDSKAVLLFKS 129
GS+VTH T F+YF +D VLLFK+
Sbjct: 176 GSFVTHSTGCFIYFSMDKLYVLLFKT 201
>AT1G23220.1 | chr1:8242614-8244136 FORWARD LENGTH=130
Length = 129
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 47 IQLKSADMKEEMRQEAFDIARVAFEKHTMEKD---IAEYIKKEFDKNHGPTWHCIVGRNF 103
++++++DM + AF ++R + D +A +KK+FD +GP WHCIVG +F
Sbjct: 36 VRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSF 95
Query: 104 GSYVTHETNYFVYFYIDSKAVLLFKSG 130
GSYVTH T F+YF ID VLLFK+
Sbjct: 96 GSYVTHSTGGFLYFQIDKVYVLLFKTA 122
>AT4G27360.1 | chr4:13694032-13694517 FORWARD LENGTH=104
Length = 103
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 46 KIQLKSADMKEEMRQEAFDIARVAFEKH--TMEKDIAEYIKKEFDKNHGPTWHCIVGRNF 103
K + DMK+ M+++A +A A + T IA +IKKEFD+++G W CIVG +F
Sbjct: 5 KAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIVGTHF 64
Query: 104 GSYVTHETNYFVYFYIDSKAVLLFKS 129
GS+VTH + F++F + S +LLFK
Sbjct: 65 GSFVTHCSGCFIHFSVGSLTILLFKG 90
>AT3G16120.1 | chr3:5465035-5465395 FORWARD LENGTH=94
Length = 93
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 46 KIQLKSADMKEEMRQEAFDIARVAFEKHTM--EKDIAEYIKKEFDKNHGPTWHCIVGRNF 103
K +++ DM +M+ +A IA + + + IA +IKKEFD+ +G W C+VG NF
Sbjct: 5 KAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNF 64
Query: 104 GSYVTHETNYFVYFYIDSKAVLLFKS 129
G + TH F+YF++ + L+FK
Sbjct: 65 GCFFTHSKGTFIYFHLGTLNFLIFKG 90
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,046,836
Number of extensions: 72055
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 5
Length of query: 130
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 43
Effective length of database: 8,721,377
Effective search space: 375019211
Effective search space used: 375019211
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)