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Os02g0269200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Dynein light chain, type 1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.67 (0.0461) R2 : 0.879
β1 : -1.2 (0.169) R2dD : 0.0157 R2D : 0.0239
β2 : 4.37 (0.121) R2dC : 0.353 R2C : 0.447
β3 : -4.56 (0.118) R2dE : 0.408 R2E : 0.502
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.447 (0.0985) R2dN8 : 0.00702 R2N8 : 0.00105
σ : 0.861
deviance : 342.12
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_____
C
peak time of C : 17.3
E
wheather : temperature
threshold : 4.211
memory length : 229
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.63
open length of G : 9.55

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
339.36 0.866 7.71 -1.27 4.77 -4.58 1.73 -0.611 0.403 17.5 7.524 252 4.02 8.99
335.99 0.854 7.71 -1.22 4.49 -4.5 1.79 -- 0.418 17.4 5.547 231 3.77 9.4
340.4 0.859 7.69 -1.23 4.39 -4.46 -- -0.75 0.401 17.4 4.111 234 3.6 9.52
342.12 0.861 7.67 -1.2 4.37 -4.56 -- -- 0.447 17.3 4.211 229 3.63 9.55
770.4 1.29 7.62 -0.878 -- -5.16 -- -0.343 0.423 -- -8.34 117 2.53 10.8
499.57 1.05 7.84 -1.47 6.44 -- 1.98 -- 0.205 19.8 -- -- -- --
510.94 1.06 7.84 -1.52 6.44 -- -- -- 0.208 19.8 -- -- -- --
653.65 1.19 7.63 -1.39 -- -5.61 -- -- 0.000287 -- -6.565 280 0.0166 11.8
383.92 0.913 7.65 -- 4.35 -4.79 -- -- 0.604 17.1 3.919 233 3.57 9.53
2761.6 2.46 7.68 -1.6 -- -- -- -- 0.118 -- -- -- -- --
571.97 1.12 7.8 -- 6.46 -- -- -- 0.377 19.8 -- -- -- --
641.51 1.18 7.57 -- -- -6 -- -- 0.62 -- -2.05 336 0.00813 10.8
2828.9 2.48 7.64 -- -- -- -- -- 0.296 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 346.02 temperature 10.0 270 > th dose dependent rect. 4 9
2 347.29 temperature 10.0 90 > th dose dependent rect. 19 19
3 351.54 temperature 10.0 270 > th dose dependent rect. 19 17
4 351.67 precipitation 0.1 90 < th dose independent rect. 19 19
5 351.67 precipitation 0.1 90 < th dose dependent rect. 19 19
6 352.05 atmosphere 995.0 90 > th dose dependent rect. 14 5
7 352.54 wind 1.0 270 > th dose independent rect. 13 4
10 352.80 wind 9.0 90 < th dose independent rect. 14 5
11 353.43 precipitation 0.1 90 < th dose independent rect. 14 5
12 353.43 precipitation 0.1 90 < th dose dependent rect. 14 5
13 353.48 wind 9.0 90 < th dose independent rect. 19 19
14 353.50 temperature 10.0 90 > th dose independent rect. 14 5
16 353.50 atmosphere 1010.0 90 < th dose independent rect. 14 5
18 353.50 temperature 10.0 90 > th dose independent rect. 19 19
19 353.50 atmosphere 995.0 90 > th dose independent rect. 19 19
22 353.65 humidity 50.0 270 > th dose independent rect. 17 20
23 353.87 temperature 10.0 10 > th dose dependent rect. 20 18
24 354.09 precipitation 0.1 270 < th dose independent rect. 17 20
25 354.09 precipitation 0.1 270 < th dose dependent rect. 17 20
31 354.50 temperature 10.0 270 > th dose independent rect. 17 20
32 354.51 radiation 40.0 90 < th dose independent rect. 14 5
35 354.86 atmosphere 995.0 90 > th dose independent rect. 14 5
37 355.37 radiation 1.0 270 > th dose independent rect. 13 5
39 355.49 wind 9.0 270 < th dose independent rect. 17 20
41 356.04 radiation 1.0 270 > th dose independent rect. 14 3
55 357.58 atmosphere 995.0 270 > th dose independent rect. 17 20
57 357.92 atmosphere 995.0 270 > th dose dependent rect. 14 3
76 358.54 temperature 10.0 90 > th dose independent rect. 19 6
77 358.54 temperature 30.0 90 < th dose independent rect. 19 6
78 358.54 humidity 50.0 90 > th dose independent rect. 19 6
80 358.54 atmosphere 995.0 90 > th dose independent rect. 19 6
81 358.54 radiation 1.0 90 < th dose independent rect. 19 6
86 358.54 temperature 10.0 90 > th dose independent rect. 1 18
87 358.54 atmosphere 1015.0 90 < th dose independent rect. 1 18
88 358.54 radiation 1.0 90 < th dose dependent rect. 19 6
99 359.18 wind 9.0 90 < th dose independent rect. 19 6
100 359.18 wind 9.0 90 < th dose independent rect. 1 18
104 359.35 radiation 40.0 270 < th dose independent rect. 14 3
118 360.74 precipitation 0.1 90 < th dose independent rect. 19 6
119 360.74 precipitation 0.1 90 < th dose dependent rect. 19 6
121 361.06 humidity 90.0 270 < th dose independent rect. 14 3
130 362.23 precipitation 0.1 90 < th dose independent rect. 1 18
131 362.23 precipitation 0.1 90 < th dose dependent rect. 1 18
138 363.07 atmosphere 995.0 90 > th dose independent rect. 1 18
158 364.47 radiation 1.0 270 < th dose independent rect. 17 6
161 364.59 wind 9.0 270 < th dose independent rect. 22 21
162 364.70 temperature 10.0 90 > th dose dependent rect. 14 5
167 365.03 radiation 1.0 270 < th dose dependent rect. 16 7
168 365.07 humidity 60.0 270 > th dose independent rect. 19 3
170 365.23 temperature 10.0 270 > th dose independent rect. 19 3
171 365.23 temperature 30.0 270 < th dose independent rect. 19 3
173 365.23 atmosphere 995.0 270 > th dose independent rect. 19 3
174 365.23 radiation 1.0 270 < th dose independent rect. 19 3
179 365.23 temperature 10.0 270 > th dose independent rect. 22 21
180 365.23 radiation 1.0 270 < th dose dependent rect. 19 3
191 365.73 wind 9.0 270 < th dose independent rect. 19 3
192 365.79 precipitation 0.1 270 < th dose independent rect. 19 3
193 365.79 precipitation 0.1 270 < th dose dependent rect. 19 3
200 366.19 temperature 10.0 270 > th dose dependent rect. 14 3
203 366.37 wind 1.0 270 > th dose independent rect. 19 3
240 367.50 temperature 10.0 1440 > th dose independent rect. 15 5
243 367.50 temperature 10.0 1440 > th dose independent rect. 20 19
246 367.51 wind 1.0 270 > th dose dependent rect. 13 4
256 367.86 temperature 10.0 270 > th dose independent rect. 22 10
257 367.86 temperature 30.0 270 < th dose independent rect. 22 10
258 367.86 humidity 50.0 270 > th dose independent rect. 22 10
260 367.86 atmosphere 995.0 270 > th dose independent rect. 22 10
261 367.86 temperature 10.0 270 > th dose independent rect. 8 14
262 367.88 radiation 40.0 270 < th dose independent rect. 22 10
264 367.95 wind 9.0 270 < th dose independent rect. 22 10
265 367.95 wind 9.0 270 < th dose independent rect. 23 19
267 368.08 humidity 50.0 270 > th dose independent rect. 17 7
273 368.36 radiation 30.0 43200 < th dose dependent rect. 20 6
275 368.54 radiation 1.0 270 < th dose independent sin 17 NA
279 368.64 radiation 1.0 270 > th dose independent sin 17 NA
285 368.66 temperature 10.0 270 > th dose independent rect. 23 19
296 368.95 radiation 40.0 270 < th dose dependent rect. 22 10
312 369.10 temperature 10.0 270 > th dose independent rect. 17 7
313 369.10 radiation 20.0 270 < th dose independent rect. 17 7
319 369.21 atmosphere 1015.0 270 < th dose independent rect. 23 19
328 369.39 wind 1.0 270 > th dose independent rect. 18 5
347 369.61 radiation 1.0 270 < th dose dependent sin 18 NA
367 370.06 wind 1.0 270 > th dose independent rect. 17 7
382 370.46 precipitation 0.1 270 < th dose independent rect. 3 10
383 370.46 precipitation 0.1 270 < th dose dependent rect. 3 10
385 370.50 precipitation 0.1 270 < th dose independent rect. 22 21
386 370.50 precipitation 0.1 270 < th dose dependent rect. 22 21
403 370.80 wind 9.0 270 < th dose independent rect. 17 7
433 371.49 precipitation 0.1 270 < th dose independent rect. 17 7
434 371.49 precipitation 0.1 270 < th dose dependent rect. 17 7
444 371.81 atmosphere 995.0 270 > th dose independent rect. 17 7
445 371.86 radiation 1.0 270 < th dose dependent rect. 9 14
460 372.05 radiation 1.0 270 < th dose independent rect. 9 14
461 372.07 precipitation 0.1 270 < th dose independent rect. 23 19
462 372.07 precipitation 0.1 270 < th dose dependent rect. 23 19
466 372.19 wind 9.0 270 < th dose independent rect. 13 15
467 372.19 temperature 10.0 270 > th dose dependent rect. 19 3
480 372.44 atmosphere 1015.0 270 < th dose independent rect. 22 21
507 373.00 wind 9.0 270 < th dose independent rect. 8 14
520 373.26 wind 1.0 270 > th dose independent rect. 17 20
543 373.73 atmosphere 1015.0 270 < th dose independent rect. 23 9
549 373.79 wind 9.0 270 < th dose independent rect. 4 9
553 373.84 temperature 10.0 270 > th dose independent rect. 4 9
554 373.84 atmosphere 995.0 270 > th dose independent rect. 4 9
555 373.84 atmosphere 1015.0 270 < th dose independent rect. 4 9
557 373.84 temperature 10.0 270 > th dose independent rect. 13 15
577 374.23 radiation 1.0 1440 < th dose dependent rect. 20 6
608 374.67 radiation 1.0 270 > th dose dependent rect. 14 3
627 375.09 precipitation 0.1 270 < th dose independent rect. 22 10
629 375.09 precipitation 0.1 270 < th dose dependent rect. 22 10
654 375.32 atmosphere 1015.0 270 < th dose independent rect. 19 3
673 375.41 radiation 20.0 10 < th dose dependent rect. 1 18
692 375.71 temperature 10.0 10 > th dose dependent rect. 14 6
701 375.79 precipitation 0.1 270 < th dose independent rect. 8 14
703 375.79 precipitation 0.1 270 < th dose dependent rect. 8 14
722 376.13 temperature 10.0 1440 > th dose independent rect. 20 6
725 376.13 temperature 30.0 1440 < th dose independent rect. 20 6
729 376.13 humidity 50.0 1440 > th dose independent rect. 20 6
735 376.13 atmosphere 995.0 1440 > th dose independent rect. 20 6
736 376.13 radiation 1.0 1440 < th dose independent rect. 20 6
757 376.13 temperature 10.0 1440 > th dose independent rect. 2 18
820 376.81 humidity 50.0 270 > th dose independent rect. 4 9
852 377.08 temperature 30.0 270 < th dose independent rect. 17 7
853 377.09 atmosphere 995.0 270 > th dose independent rect. 22 21
854 377.14 humidity 50.0 90 > th dose dependent rect. 19 6
855 377.15 temperature 10.0 90 > th dose dependent rect. 19 6
863 377.30 radiation 1.0 270 > th dose dependent rect. 14 15
928 378.06 atmosphere 1015.0 90 < th dose independent rect. 19 19
961 378.46 atmosphere 1015.0 90 < th dose independent rect. 19 6