BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0269200 Os02g0269200|AK066218
         (99 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0269200  Dynein light chain, type 1 family protein           152   4e-38
AK064654                                                           70   3e-13
AK062727                                                           69   9e-13
Os01g0760000  Similar to Dynein light chain 1, cytoplasmic         67   3e-12
Os04g0462600  Dynein light chain, type 1 family protein            66   4e-12
Os01g0555600  Dynein light chain, type 1 family protein            66   6e-12

>Os02g0269200 Dynein light chain, type 1 family protein
          Length = 99

 Score =  152 bits (385), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 75/89 (84%), Positives = 75/89 (84%)

Query: 1  MLEGKARVEDTDMPXXXXXXXXXXXXXXLDLFDVADCRAIAGHIKAEFDKRYGVGWQCVV 60
          MLEGKARVEDTDMP              LDLFDVADCRAIAGHIKAEFDKRYGVGWQCVV
Sbjct: 1  MLEGKARVEDTDMPARMQAAATSAASRALDLFDVADCRAIAGHIKAEFDKRYGVGWQCVV 60

Query: 61 GANFGCFFTHTSGTFIYFSLERLSFLLFK 89
          GANFGCFFTHTSGTFIYFSLERLSFLLFK
Sbjct: 61 GANFGCFFTHTSGTFIYFSLERLSFLLFK 89



>AK064654 
          Length = 89

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 1  MLEGKARVEDTDMPXXXXXXXXXXXXXXLDLFDVADCRAIAGHIKAEFDKRYGVGWQCVV 60
          M + KA + + DM               L+ +++   + IA HIK EFDK+Y   W C V
Sbjct: 1  MCDRKAVIRNADMSEEMQQDSVECATQALEKYNIG--KDIAAHIKKEFDKKYNPTWHCTV 58

Query: 61 GANFGCFFTHTSGTFIYFSLERLSFLLFK 89
          G NFG + TH +  FIYF L +++ LLFK
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87



>AK062727 
          Length = 91

 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 5  KARVEDTDMPXXXXXXXXXXXXXXLDLFDVADCRAIAGHIKAEFDKRYGVGWQCVVGANF 64
          KA +++ DM               ++ F++   + IA +IK EFDK+Y   W C+VG NF
Sbjct: 7  KAVIKNADMSEDMQTDATEIATQAMEKFNIE--KDIAAYIKKEFDKKYNPTWHCIVGRNF 64

Query: 65 GCFFTHTSGTFIYFSLERLSFLLFK 89
          G + TH +  FIYF L +++ LLFK
Sbjct: 65 GSYVTHETKHFIYFYLGQVAILLFK 89



>Os01g0760000 Similar to Dynein light chain 1, cytoplasmic
          Length = 64

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query: 47 EFDKRYGVGWQCVVGANFGCFFTHTSGTFIYFSLERLSFLLFK 89
          EFD  +G GWQCVVGA+FGC+FTH+ G+FIYF L  L FL+FK
Sbjct: 18 EFDMIHGPGWQCVVGASFGCYFTHSKGSFIYFKLGALRFLVFK 60



>Os04g0462600 Dynein light chain, type 1 family protein
          Length = 190

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 42/83 (50%)

Query: 7   RVEDTDMPXXXXXXXXXXXXXXLDLFDVADCRAIAGHIKAEFDKRYGVGWQCVVGANFGC 66
           RV   DMP                     D + +A  +K EFD  YG  W C+VG +FG 
Sbjct: 98  RVRAADMPPALQRRAIRVALEATAAMPRIDSKRLALALKKEFDTTYGPAWHCIVGTSFGS 157

Query: 67  FFTHTSGTFIYFSLERLSFLLFK 89
           + TH+ G F+YFS+++L  LLF+
Sbjct: 158 YVTHSLGGFLYFSVDKLYILLFR 180



>Os01g0555600 Dynein light chain, type 1 family protein
          Length = 213

 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%)

Query: 30  DLFDVADCRAIAGHIKAEFDKRYGVGWQCVVGANFGCFFTHTSGTFIYFSLERLSFLLFK 89
           D  D    R +A  +K EFDK YG  W C+VG ++G F TH  G F+YFS++++  +LFK
Sbjct: 144 DSLDKFSSRQLAHDVKKEFDKVYGPTWHCIVGTSYGSFVTHARGCFLYFSMDKIIVMLFK 203



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.144    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,419,082
Number of extensions: 70567
Number of successful extensions: 113
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 6
Length of query: 99
Length of database: 17,035,801
Length adjustment: 68
Effective length of query: 31
Effective length of database: 13,485,249
Effective search space: 418042719
Effective search space used: 418042719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)