Os04g0462600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Dynein light chain, type 1 family protein.
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Os04g0462600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Dynein light chain, type 1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.85 | 0.479 | 9.03 | 2.65 | 0.0434 | 0.902 | -2.31 | -1.04 | 0.113 | 23.7 | 0.94 | 91 | -- | -- |
| 104.61 | 0.476 | 9.01 | 2.7 | 0.000633 | 0.877 | -1.27 | -- | 0.119 | 23 | 0.7969 | 100 | -- | -- |
| 106.59 | 0.481 | 9.03 | 2.76 | 0.0752 | 0.927 | -- | 0.79 | 0.129 | 0.113 | 1.17 | 86 | -- | -- |
| 110.26 | 0.489 | 9.01 | 2.77 | 0.0329 | 0.852 | -- | -- | 0.128 | 7.16 | 0.7964 | 101 | -- | -- |
| 106.92 | 0.482 | 9.01 | 2.78 | -- | 0.909 | -- | 0.839 | 0.144 | -- | 1.24 | 90 | -- | -- |
| 117.23 | 0.508 | 8.99 | 2.74 | 1 | -- | 1.19 | -- | 0.195 | 12.3 | -- | -- | -- | -- |
| 123.31 | 0.52 | 8.99 | 2.79 | 1 | -- | -- | -- | 0.201 | 12.4 | -- | -- | -- | -- |
| 110.32 | 0.489 | 9.02 | 2.75 | -- | 0.867 | -- | -- | 0.128 | -- | 0.7983 | 100 | -- | -- |
| 303.38 | 0.811 | 9.09 | -- | 0.42 | 1.17 | -- | -- | -0.221 | 2.42 | 0.14 | 126 | -- | -- |
| 186.21 | 0.638 | 9.01 | 2.76 | -- | -- | -- | -- | 0.185 | -- | -- | -- | -- | -- |
| 328.29 | 0.848 | 9.06 | -- | 0.961 | -- | -- | -- | -0.109 | 12.2 | -- | -- | -- | -- |
| 307.95 | 0.817 | 9.07 | -- | -- | 0.932 | -- | -- | -0.103 | -- | 0.1396 | 75 | -- | -- |
| 386.46 | 0.918 | 9.08 | -- | -- | -- | -- | -- | -0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.42 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 3 | 100.33 | wind | 7.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 5 | 100.69 | wind | 7.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 10 | 101.74 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 11 | 101.89 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 12 | 101.91 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 14 | 102.02 | wind | 3.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 15 | 102.06 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 16 | 102.08 | wind | 9.0 | 14400 | < th | dose independent | rect. | 21 | 17 |
| 18 | 102.08 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 7 | 6 |
| 20 | 102.13 | wind | 9.0 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 23 | 102.20 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 25 | 102.24 | radiation | 1.0 | 90 | > th | dose independent | rect. | 15 | 23 |
| 32 | 102.34 | radiation | 1.0 | 90 | < th | dose independent | rect. | 18 | 23 |
| 53 | 102.88 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 55 | 102.89 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 63 | 102.98 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 67 | 103.05 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 23 |
| 74 | 103.18 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 22 | 16 |
| 80 | 103.20 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 83 | 103.22 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 87 | 103.26 | wind | 9.0 | 14400 | < th | dose independent | sin | 5 | NA |
| 94 | 103.29 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 99 | 103.31 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 127 | 103.49 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 131 | 103.49 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 139 | 103.51 | wind | 9.0 | 14400 | > th | dose independent | rect. | 21 | 17 |
| 160 | 103.59 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 175 | 103.64 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 181 | 103.66 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 206 | 103.72 | wind | 3.0 | 14400 | < th | dose independent | rect. | 19 | 10 |
| 232 | 103.80 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 18 | 23 |
| 243 | 103.88 | wind | 9.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 254 | 103.93 | radiation | 1.0 | 90 | > th | dose independent | no | NA | NA |
| 256 | 103.93 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 15 |
| 302 | 103.94 | radiation | 1.0 | 90 | < th | dose independent | no | NA | NA |
| 313 | 103.95 | radiation | 1.0 | 90 | < th | dose independent | rect. | 9 | 23 |
| 314 | 103.95 | radiation | 1.0 | 90 | < th | dose independent | rect. | 11 | 23 |
| 319 | 103.97 | radiation | 1.0 | 90 | < th | dose independent | rect. | 15 | 23 |
| 346 | 104.02 | wind | 3.0 | 14400 | > th | dose independent | rect. | 19 | 11 |
| 394 | 104.13 | radiation | 1.0 | 90 | > th | dose independent | rect. | 17 | 20 |
| 438 | 104.34 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 9 |
| 451 | 104.40 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 460 | 104.42 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 11 |
| 489 | 104.51 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 501 | 104.59 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 14 |
| 521 | 104.66 | radiation | 1.0 | 90 | < th | dose dependent | no | NA | NA |
| 522 | 104.66 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 525 | 104.67 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 529 | 104.69 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 559 | 104.83 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 3 |
| 581 | 104.92 | wind | 3.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 587 | 104.94 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 634 | 105.06 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 637 | 105.07 | wind | 9.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 642 | 105.10 | wind | 3.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 659 | 105.17 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 662 | 105.17 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 23 |
| 663 | 105.17 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 702 | 105.28 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 708 | 105.31 | temperature | 25.0 | 270 | < th | dose independent | rect. | 4 | 8 |
| 741 | 105.40 | radiation | 1.0 | 90 | < th | dose independent | sin | 9 | NA |
| 816 | 105.57 | radiation | 1.0 | 90 | > th | dose independent | sin | 9 | NA |
| 825 | 105.59 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 829 | 105.61 | temperature | 30.0 | 720 | < th | dose independent | rect. | 18 | 1 |
| 838 | 105.63 | humidity | 60.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 953 | 105.80 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 1 | 12 |
| 961 | 105.81 | wind | 9.0 | 14400 | > th | dose independent | rect. | 19 | 19 |
| 962 | 105.81 | wind | 9.0 | 14400 | < th | dose independent | rect. | 19 | 19 |