BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0462600 Os04g0462600|AK111125
         (190 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G23220.1  | chr1:8242614-8244136 FORWARD LENGTH=130            137   5e-33
AT5G20110.1  | chr5:6791542-6793253 REVERSE LENGTH=210            121   3e-28
AT3G16120.1  | chr3:5465035-5465395 FORWARD LENGTH=94              83   8e-17
AT4G15930.1  | chr4:9036344-9037825 FORWARD LENGTH=124             82   2e-16
AT4G27360.1  | chr4:13694032-13694517 FORWARD LENGTH=104           79   2e-15

>AT1G23220.1 | chr1:8242614-8244136 FORWARD LENGTH=130
          Length = 129

 Score =  137 bits (344), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 63/97 (64%), Positives = 77/97 (79%), Gaps = 1/97 (1%)

Query: 91  EEKKVAVRVRAADMPPALQRRAIRVALEATAAMP-RIDSKRLALALKKEFDTTYGPAWHC 149
           ++ +  VRVRA+DMP   Q RA  ++ E   A P + D+KRLA ALKK+FD+ YGPAWHC
Sbjct: 30  QKDEFNVRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHC 89

Query: 150 IVGTSFGSYVTHSLGGFLYFSVDKLYILLFRTAVEPL 186
           IVGTSFGSYVTHS GGFLYF +DK+Y+LLF+TAVEPL
Sbjct: 90  IVGTSFGSYVTHSTGGFLYFQIDKVYVLLFKTAVEPL 126



>AT5G20110.1 | chr5:6791542-6793253 REVERSE LENGTH=210
          Length = 209

 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 67/93 (72%)

Query: 95  VAVRVRAADMPPALQRRAIRVALEATAAMPRIDSKRLALALKKEFDTTYGPAWHCIVGTS 154
           + VR+ AADMP  +Q  A R A     ++ +  SK +A  LKKEFD  YGPAWHCIVG+S
Sbjct: 115 LTVRILAADMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSS 174

Query: 155 FGSYVTHSLGGFLYFSVDKLYILLFRTAVEPLS 187
           FGS+VTHS G F+YFS+DKLY+LLF+T V P S
Sbjct: 175 FGSFVTHSTGCFIYFSMDKLYVLLFKTKVRPAS 207



>AT3G16120.1 | chr3:5465035-5465395 FORWARD LENGTH=94
          Length = 93

 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 52/85 (61%)

Query: 98  RVRAADMPPALQRRAIRVALEATAAMPRIDSKRLALALKKEFDTTYGPAWHCIVGTSFGS 157
           +V   DMP  +Q +A+++A ++       DS  +A  +KKEFD  YG  W C+VGT+FG 
Sbjct: 7   KVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNFGC 66

Query: 158 YVTHSLGGFLYFSVDKLYILLFRTA 182
           + THS G F+YF +  L  L+F+ A
Sbjct: 67  FFTHSKGTFIYFHLGTLNFLIFKGA 91



>AT4G15930.1 | chr4:9036344-9037825 FORWARD LENGTH=124
          Length = 123

 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 2/83 (2%)

Query: 99  VRAADMPPALQRRAIRVALEATAAMPRIDSKRLALALKKEFDTTYGPAWHCIVGTSFGSY 158
           +++ADM   +Q+ AI +A+ A         K +A  +KKEFD  +G  WHCIVG +FGSY
Sbjct: 42  IKSADMKDDMQKEAIEIAISAFEKYSV--EKDIAENIKKEFDKKHGATWHCIVGRNFGSY 99

Query: 159 VTHSLGGFLYFSVDKLYILLFRT 181
           VTH    F+YF +D+  +LLF++
Sbjct: 100 VTHETNHFVYFYLDQKAVLLFKS 122



>AT4G27360.1 | chr4:13694032-13694517 FORWARD LENGTH=104
          Length = 103

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 53/84 (63%), Gaps = 1/84 (1%)

Query: 103 DMPPALQRRAIRVALEATAAMPRIDSKRLALALKKEFDTTYGPAWHCIVGTSFGSYVTHS 162
           DM   ++  A+ +A +A       +  ++A  +KKEFD +YG  W CIVGT FGS+VTH 
Sbjct: 12  DMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIVGTHFGSFVTHC 71

Query: 163 LGGFLYFSVDKLYILLFRTAV-EP 185
            G F++FSV  L ILLF+ +V EP
Sbjct: 72  SGCFIHFSVGSLTILLFKGSVGEP 95



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,296,489
Number of extensions: 74887
Number of successful extensions: 150
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 5
Length of query: 190
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 97
Effective length of database: 8,556,881
Effective search space: 830017457
Effective search space used: 830017457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)