Os01g0555600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Dynein light chain, type 1 family protein.
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Os01g0555600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Dynein light chain, type 1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 161.47 | 0.597 | 7.5 | -0.638 | 2.09 | 1.34 | -2.93 | 2.91 | -0.425 | 20.7 | 19.27 | 1050 | -- | -- |
| 167.37 | 0.603 | 7.58 | -1.34 | 2 | 1.47 | -2.63 | -- | -0.608 | 20.7 | 20.64 | 979 | -- | -- |
| 182.15 | 0.629 | 7.49 | -0.526 | 2.3 | 1.17 | -- | 2.63 | -0.399 | 21.1 | 19.6 | 1449 | -- | -- |
| 186.93 | 0.637 | 7.59 | -1.26 | 2.29 | 1.21 | -- | -- | -0.612 | 21 | 21.56 | 1456 | -- | -- |
| 363.18 | 0.888 | 7.52 | -0.87 | -- | 2.61 | -- | 2.88 | -0.7 | -- | 20.04 | 721 | -- | -- |
| 222.08 | 0.699 | 7.53 | -0.891 | 2.3 | -- | -2.22 | -- | -0.329 | 21.1 | -- | -- | -- | -- |
| 238.9 | 0.724 | 7.53 | -0.817 | 2.31 | -- | -- | -- | -0.329 | 21.2 | -- | -- | -- | -- |
| 348.11 | 0.869 | 7.58 | -1.54 | -- | 2.71 | -- | -- | -0.814 | -- | 21.46 | 716 | -- | -- |
| 226.57 | 0.701 | 7.58 | -- | 2.32 | 1.13 | -- | -- | -0.484 | 20.8 | 21.74 | 1294 | -- | -- |
| 547.07 | 1.09 | 7.47 | -0.809 | -- | -- | -- | -- | -0.341 | -- | -- | -- | -- | -- |
| 256.48 | 0.749 | 7.51 | -- | 2.31 | -- | -- | -- | -0.238 | 21.2 | -- | -- | -- | -- |
| 400.77 | 0.932 | 7.5 | -- | -- | 2.35 | -- | -- | -0.479 | -- | 23.7 | 710 | -- | -- |
| 564.33 | 1.11 | 7.45 | -- | -- | -- | -- | -- | -0.251 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 157.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 20 |
| 6 | 158.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 20 |
| 10 | 158.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 18 |
| 17 | 159.44 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 41 | 160.50 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 52 | 160.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 22 |
| 74 | 161.25 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 87 | 161.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 88 | 161.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 181 | 162.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 22 |
| 192 | 162.31 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 256 | 162.76 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 427 | 163.74 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 441 | 163.84 | temperature | 30 | 1440 | < th | dose dependent | sin | 17 | NA |
| 456 | 163.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 458 | 163.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 21 |
| 467 | 163.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 478 | 164.00 | temperature | 10 | 1440 | > th | dose dependent | sin | 16 | NA |
| 614 | 164.61 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 623 | 164.67 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 624 | 164.67 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 712 | 164.95 | temperature | 25 | 1440 | > th | dose independent | rect. | 12 | 21 |
| 740 | 165.03 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 741 | 165.03 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 757 | 165.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 18 |
| 842 | 165.22 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 18 |
| 898 | 165.29 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 921 | 165.33 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 21 |
| 1000 | 165.43 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 10 |