Os02g0580400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Dynein light chain, type 1 family protein.
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Os02g0580400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Dynein light chain, type 1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.43 | 0.444 | 10.1 | 1.9 | 0.813 | -0.726 | -0.286 | 2.45 | 0.0915 | 0.988 | 20.6 | 90 | -- | -- |
| 91.09 | 0.445 | 10.1 | 1.98 | 0.801 | -1.75 | 0.0286 | -- | 0.118 | 1.06 | 19.6 | 225 | -- | -- |
| 89.74 | 0.441 | 10.1 | 1.92 | 0.812 | -0.772 | -- | 2.23 | 0.0959 | 0.991 | 20.6 | 94 | -- | -- |
| 91.03 | 0.444 | 10.1 | 1.96 | 0.808 | -1.74 | -- | -- | 0.117 | 1.07 | 19.67 | 221 | -- | -- |
| 122.38 | 0.515 | 10.1 | 1.95 | -- | -1.27 | -- | 0.328 | 0.0967 | -- | 21.43 | 944 | -- | -- |
| 107.62 | 0.486 | 10.1 | 2.24 | 0.752 | -- | 0.103 | -- | 0.206 | 0.97 | -- | -- | -- | -- |
| 107.67 | 0.486 | 10.1 | 2.23 | 0.752 | -- | -- | -- | 0.205 | 0.97 | -- | -- | -- | -- |
| 122.05 | 0.515 | 10.1 | 1.89 | -- | -1.51 | -- | -- | 0.0557 | -- | 20.95 | 934 | -- | -- |
| 111.98 | 0.493 | 10.2 | -- | 0.69 | -1.9 | -- | -- | -0.434 | 1.13 | 21.11 | 43199 | -- | -- |
| 142.87 | 0.559 | 10 | 2.26 | -- | -- | -- | -- | 0.22 | -- | -- | -- | -- | -- |
| 239.11 | 0.723 | 10.1 | -- | 0.789 | -- | -- | -- | -0.0436 | 1.09 | -- | -- | -- | -- |
| 144.59 | 0.56 | 10.2 | -- | -- | -1.95 | -- | -- | -0.44 | -- | 20.36 | 47520 | -- | -- |
| 277.75 | 0.778 | 10.1 | -- | -- | -- | -- | -- | -0.0313 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.31 | temperature | 10 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 7 | 87.15 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 9 | 87.29 | radiation | 20 | 4320 | < th | dose independent | rect. | 21 | 9 |
| 10 | 87.34 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 13 | 88.27 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 19 | 88.56 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 19 |
| 24 | 88.79 | temperature | 15 | 90 | > th | dose independent | rect. | 7 | 23 |
| 27 | 88.90 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 30 | 89.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 35 | 89.15 | humidity | 50 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 37 | 89.22 | humidity | 80 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 39 | 89.25 | humidity | 50 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 44 | 89.43 | temperature | 20 | 90 | < th | dose dependent | rect. | 18 | 22 |
| 48 | 89.49 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 19 |
| 52 | 89.52 | temperature | 20 | 90 | < th | dose dependent | rect. | 18 | 18 |
| 74 | 89.66 | temperature | 20 | 90 | < th | dose dependent | rect. | 6 | 23 |
| 76 | 89.67 | temperature | 20 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 78 | 89.68 | temperature | 15 | 270 | > th | dose independent | rect. | 16 | 23 |
| 92 | 89.72 | temperature | 20 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 99 | 89.74 | temperature | 20 | 90 | < th | dose dependent | rect. | 14 | 22 |
| 101 | 89.75 | temperature | 20 | 90 | < th | dose dependent | no | NA | NA |
| 122 | 89.83 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 134 | 89.86 | temperature | 20 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 139 | 89.89 | humidity | 80 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 168 | 89.98 | temperature | 20 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 175 | 90.01 | radiation | 20 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 202 | 90.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 213 | 90.07 | temperature | 20 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 216 | 90.08 | temperature | 20 | 90 | < th | dose dependent | sin | 7 | NA |
| 269 | 90.14 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 285 | 90.16 | temperature | 15 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 298 | 90.18 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 300 | 90.18 | temperature | 15 | 4320 | < th | dose dependent | rect. | 24 | 3 |
| 338 | 90.26 | temperature | 20 | 10 | < th | dose dependent | sin | 6 | NA |
| 340 | 90.27 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 350 | 90.31 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 359 | 90.36 | humidity | 50 | 43200 | < th | dose dependent | sin | 9 | NA |
| 400 | 90.46 | humidity | 50 | 43200 | > th | dose dependent | rect. | 4 | 5 |
| 452 | 90.55 | temperature | 15 | 4320 | < th | dose dependent | rect. | 23 | 18 |
| 463 | 90.58 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 9 |
| 479 | 90.60 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 12 |
| 482 | 90.60 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 497 | 90.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 563 | 90.69 | temperature | 15 | 4320 | < th | dose dependent | sin | 9 | NA |
| 572 | 90.70 | humidity | 50 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 595 | 90.72 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 21 |
| 617 | 90.75 | temperature | 15 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 618 | 90.75 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 637 | 90.77 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 21 |
| 638 | 90.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 650 | 90.79 | humidity | 50 | 43200 | > th | dose dependent | rect. | 3 | 7 |
| 683 | 90.83 | temperature | 20 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 692 | 90.85 | humidity | 70 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 724 | 90.90 | humidity | 60 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 738 | 90.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 771 | 90.96 | humidity | 60 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 792 | 90.98 | radiation | 10 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 815 | 90.99 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 855 | 91.02 | humidity | 50 | 43200 | < th | dose dependent | rect. | 14 | 20 |
| 887 | 91.05 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 928 | 91.09 | temperature | 15 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 993 | 91.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |