BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0228500 Os01g0228500|AK119627
(330 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0228500 Harpin-induced 1 domain containing protein 453 e-128
Os06g0163300 Harpin-induced 1 domain containing protein 230 9e-61
Os04g0689500 Conserved hypothetical protein 134 1e-31
Os02g0667600 Harpin-induced 1 domain containing protein 129 4e-30
Os04g0430600 Conserved hypothetical protein 116 2e-26
Os03g0216500 Conserved hypothetical protein 70 2e-12
>Os01g0228500 Harpin-induced 1 domain containing protein
Length = 330
Score = 453 bits (1166), Expect = e-128, Method: Compositional matrix adjust.
Identities = 233/330 (70%), Positives = 233/330 (70%)
Query: 1 MKPATSESDMTSLXXXXXXXXXXXXXXXYYVQISPSRDSHDDDGDKSPSTQATPVYNNXX 60
MKPATSESDMTSL YYVQISPSRDSHDDDGDKSPSTQATPVYNN
Sbjct: 1 MKPATSESDMTSLATSSPSRSPKAAAAAYYVQISPSRDSHDDDGDKSPSTQATPVYNNSP 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXRFSGNXXXXXXXXXXXXXXXXXXXXXKGWRDVXXXXXXX 120
RFSGN KGWRDV
Sbjct: 61 LDSPSHHSSSFGRHSRVSSASRFSGNLRSASGRSRLGGGGGRRRLGAKGWRDVDAIIDEE 120
Query: 121 XXXXXXXXXXXXXXXXXPSRCCVXXXXXXXXXXXXXXVCLIVWGIARHYKPGVLVKSLTV 180
PSRCCV VCLIVWGIARHYKPGVLVKSLTV
Sbjct: 121 EEGAYDEFDDDDDGGYEPSRCCVLAFRFSLLALAFTLVCLIVWGIARHYKPGVLVKSLTV 180
Query: 181 GNFYAGEGIDRTGVPTKLVTMNCSLQINVHNPSTMFGIHVSSTSIQILFSQIAIANGQLE 240
GNFYAGEGIDRTGVPTKLVTMNCSLQINVHNPSTMFGIHVSSTSIQILFSQIAIANGQLE
Sbjct: 181 GNFYAGEGIDRTGVPTKLVTMNCSLQINVHNPSTMFGIHVSSTSIQILFSQIAIANGQLE 240
Query: 241 KFYQPRSSHHVASAIVHGEKIPLYGAGETFALSNAGGAVPLTLDLVVRARGYVIGKLVRV 300
KFYQPRSSHHVASAIVHGEKIPLYGAGETFALSNAGGAVPLTLDLVVRARGYVIGKLVRV
Sbjct: 241 KFYQPRSSHHVASAIVHGEKIPLYGAGETFALSNAGGAVPLTLDLVVRARGYVIGKLVRV 300
Query: 301 THTKRVKCPVVIDSGSSKPIRFIQSACSYT 330
THTKRVKCPVVIDSGSSKPIRFIQSACSYT
Sbjct: 301 THTKRVKCPVVIDSGSSKPIRFIQSACSYT 330
>Os06g0163300 Harpin-induced 1 domain containing protein
Length = 322
Score = 230 bits (587), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 103/170 (60%), Positives = 138/170 (81%)
Query: 159 CLIVWGIARHYKPGVLVKSLTVGNFYAGEGIDRTGVPTKLVTMNCSLQINVHNPSTMFGI 218
CLI+WG AR Y+P V+VKSLT+ +FYAGEG D +GVPTKLVT+NCSL I V+NP++MFGI
Sbjct: 149 CLIIWGAARPYEPDVVVKSLTMDDFYAGEGTDHSGVPTKLVTLNCSLHIAVYNPASMFGI 208
Query: 219 HVSSTSIQILFSQIAIANGQLEKFYQPRSSHHVASAIVHGEKIPLYGAGETFALSNAGGA 278
HV++ I++L+S+I+I GQ+ ++YQPR SH + +A+VHG K+PLYGAG LS++GGA
Sbjct: 209 HVTTGPIRLLYSEISIGVGQVRRYYQPRKSHRLVTAVVHGNKVPLYGAGGGLMLSSSGGA 268
Query: 279 VPLTLDLVVRARGYVIGKLVRVTHTKRVKCPVVIDSGSSKPIRFIQSACS 328
VPLTLD + +RGYVIGKLVRVTH V CP+V+D+ +KPI+F + AC+
Sbjct: 269 VPLTLDFDLTSRGYVIGKLVRVTHKVHVTCPIVVDAKKTKPIKFSKKACA 318
>Os04g0689500 Conserved hypothetical protein
Length = 348
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 136/306 (44%), Gaps = 26/306 (8%)
Query: 29 YYVQISPSRDSHDDDGDKSP-STQATPVYNNXXXXXXXXXXXXXXXXXXXXXXXRFSGNX 87
YYVQ SPSRDSHD G+K+ S +TP + RFSG+
Sbjct: 63 YYVQ-SPSRDSHD--GEKTATSVHSTPALS--------PMGSPRHSVGRDSSSSRFSGHP 111
Query: 88 XXXXXXXXXXXXXXXXXXXXKGWRDVXXXXXXXXXXXXXXXXXXXXXXXXPSRCCVXXXX 147
KGW+++ P RC
Sbjct: 112 KRKGDKSSSGRKGAPAG---KGWQEIGVIEEEGLLDDEDERRGI------PKRCKYFLIF 162
Query: 148 XXXXXXXXXXVCLIVWGIARHYKPGVLVKSLTVGNFYAGEGIDRTGVPTKLVTMNCSLQI 207
L++WG +R KP +++KS+T NF G D + VPT + T N ++++
Sbjct: 163 VLGFVVLFSFFALVLWGASRSQKPQIVIKSITFDNFIIQAGTDASLVPTDMATTNSTVKL 222
Query: 208 NVHNPSTMFGIHVSSTSIQILFSQIAIANGQLEKFYQPRSSHHVASAIVHGEKIPLYGAG 267
N T FGIHV++ + +SQ+ +A+G L KFYQ RSS S V G K+PLYG G
Sbjct: 223 TYRNTGTFFGIHVTADPFTLSYSQLTLASGDLNKFYQARSSRRTVSVGVMGNKVPLYGGG 282
Query: 268 ETFALSNAGGA---VPLTLDLVVRARGYVIGKLVRVTHTKRVKCPVVIDSGS-SKPIRFI 323
T G+ VP+ L V +R YV+G LV+ T+ ++C V+++ +KPI
Sbjct: 283 PTLTAGKGSGSMAPVPMILRTTVHSRAYVLGALVKPKFTRAIECKVLMNPAKLNKPISLD 342
Query: 324 QSACSY 329
+S C Y
Sbjct: 343 KS-CIY 347
>Os02g0667600 Harpin-induced 1 domain containing protein
Length = 337
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 103/173 (59%), Gaps = 6/173 (3%)
Query: 163 WGIARHYKPGVLVKSLTVGNFYAGEGIDRTGVPTKLVTMNCSLQINVHNPSTMFGIHVSS 222
WG ++ YKP V+VKS+ ++ G DRTGVPTK++++N ++++ N T F +HV+S
Sbjct: 161 WGASKSYKPHVVVKSVVFETYHIQGGTDRTGVPTKMMSVNATVRLRFRNRGTFFSLHVTS 220
Query: 223 TSIQILFSQIAIANGQLEKFYQPRSSHHVASAIVHGEKIPLYGAG-ETFALSNAG----G 277
T + + + +A G + +FYQPR S V + V G+++PLYGAG E + N G
Sbjct: 221 TPFHLFYDDLTVATGHMAEFYQPRRSGRVVTVSVVGKQVPLYGAGAELHSKPNNGRLGPA 280
Query: 278 AVPLTLDLVVRARGYVIGKLVRVTHTKRVKCPVVIDSGS-SKPIRFIQSACSY 329
VP+ + V+RAR +++G LVR +RV C + + S KP+ + + C Y
Sbjct: 281 VVPVRMAFVLRARAHILGLLVRSKFYRRVLCRLDVREASLGKPVHGVAADCEY 333
>Os04g0430600 Conserved hypothetical protein
Length = 374
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 104/174 (59%), Gaps = 8/174 (4%)
Query: 161 IVWGIARHYKPGVLVKSLTVGNFYAGEGIDRTGVPTKLVTMNCSLQINVHNPSTMFGIHV 220
I+WG + + KP V + S+T NF G D + VPT+L T+N ++++ N + FG+HV
Sbjct: 201 ILWGASHNQKPVVSINSITFHNFVIQAGTDASLVPTELSTVNATVRMTFRNTGSFFGVHV 260
Query: 221 SSTSIQILFSQIAIANGQLEKFYQPR-SSHHVASAIVHGEKIPLYGAGETFALSNAGGA- 278
++ + + + Q+ +A+G ++ FYQ R SS HVA A+V G+K+PLYG G + + GA
Sbjct: 261 TAEPLTLYYYQLLMASGNVKYFYQSRKSSRHVAVAVV-GDKVPLYGGGSGLSSTPVKGAP 319
Query: 279 ---VPLTLDLVVRARGYVIGKLVRVTHTKRVKCPVVIDSGS-SKPIRFIQSACS 328
VPL L + R+R +V+GKLV+ V+C V +D KP+ + ACS
Sbjct: 320 PAPVPLQLAVRFRSRAFVLGKLVKPKFLTNVQCSVRLDVAKLGKPVS-LNKACS 372
>Os03g0216500 Conserved hypothetical protein
Length = 350
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 10/180 (5%)
Query: 141 CCVXXXXXXXXXXXXXXVCLIVWGIARHYKPGVLVKSLTVGNFYAGEGIDRTGVPTKLVT 200
CC+ L+ + + PGV K + F GEG+D +GV T ++
Sbjct: 152 CCIVFQVAWRVAVSVAFALLVFFVATKPRDPGVTFKVGKIQQFSLGEGLDGSGVITSFLS 211
Query: 201 MNCSLQINVHNPSTMFGIHVSSTSIQILFSQIAIANGQLEKFYQPRSSHHVASA------ 254
N ++ + V N S +F +HV + + F + A Q + SS+ V +
Sbjct: 212 CNLTVAMAVDNHSRVFTLHVRPPRLDMSFGRFTFATSQ--GVEEEGSSYDVGARGKRTVR 269
Query: 255 -IVHGEKIPLYGAGETFA-LSNAGGAVPLTLDLVVRARGYVIGKLVRVTHTKRVKCPVVI 312
V E P+Y AG L +GG +PL + + R+R ++G LVR+++ +C V +
Sbjct: 270 LFVAAEGKPMYAAGRGMQDLLESGGGLPLAVTVRARSRYRMVGSLVRLSYRHDAQCVVRL 329
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,093,230
Number of extensions: 273158
Number of successful extensions: 558
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 6
Length of query: 330
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 229
Effective length of database: 11,762,187
Effective search space: 2693540823
Effective search space used: 2693540823
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)