Os06g0163300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os06g0163300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 257.28 | 0.754 | 10.4 | -4.26 | 1.33 | 2.31 | 1.08 | -6.49 | -0.556 | 5.77 | 27.04 | 1268 | -- | -- |
| 266.18 | 0.76 | 10.2 | -2.65 | 1.36 | 1.58 | 1.29 | -- | -0.251 | 5.54 | 27.23 | 1217 | -- | -- |
| 259.49 | 0.75 | 10.4 | -4.19 | 1.35 | 2.33 | -- | -6.35 | -0.54 | 6.06 | 27.08 | 1245 | -- | -- |
| 266.55 | 0.76 | 10.2 | -2.77 | 1.33 | 1.66 | -- | -- | -0.295 | 6.03 | 26.88 | 1236 | -- | -- |
| 351.71 | 0.873 | 10.4 | -4.22 | -- | 2.39 | -- | -6 | -0.569 | -- | 26.74 | 1283 | -- | -- |
| 374.4 | 0.907 | 10.2 | -2.24 | 1.42 | -- | 1.8 | -- | -0.271 | 5.01 | -- | -- | -- | -- |
| 381.78 | 0.915 | 10.2 | -2.24 | 1.44 | -- | -- | -- | -0.279 | 5.33 | -- | -- | -- | -- |
| 356.23 | 0.879 | 10.2 | -2.76 | -- | 1.76 | -- | -- | -0.314 | -- | 26.4 | 1276 | -- | -- |
| 448.67 | 0.987 | 10.1 | -- | 1.35 | 1.2 | -- | -- | 0.236 | 5.91 | 31.5 | 1130 | -- | -- |
| 490.1 | 1.03 | 10.2 | -2.2 | -- | -- | -- | -- | -0.243 | -- | -- | -- | -- | -- |
| 514.53 | 1.06 | 10.2 | -- | 1.4 | -- | -- | -- | -0.029 | 5.39 | -- | -- | -- | -- |
| 539.76 | 1.08 | 10.1 | -- | -- | 1.23 | -- | -- | 0.258 | -- | 31.27 | 1181 | -- | -- |
| 617.19 | 1.16 | 10.2 | -- | -- | -- | -- | -- | 0.000406 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 249.82 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 16 | 259.63 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 2 |
| 30 | 260.07 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 43 | 261.79 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 46 | 262.23 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 9 |
| 65 | 264.95 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 71 | 265.73 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 94 | 266.15 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 95 | 266.32 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 96 | 266.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 106 | 266.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 129 | 267.27 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 154 | 267.67 | temperature | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 221 | 268.99 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 14 |
| 222 | 269.04 | temperature | 30 | 1440 | > th | dose independent | sin | 13 | NA |
| 227 | 269.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 233 | 269.24 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 245 | 269.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 6 |
| 246 | 269.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 251 | 269.51 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 279 | 269.86 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 9 |
| 283 | 270.01 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 359 | 270.73 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 392 | 270.83 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 2 |
| 429 | 270.89 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 471 | 271.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 527 | 271.44 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 588 | 271.78 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 19 |
| 591 | 271.79 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 16 |
| 616 | 272.01 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 19 |
| 617 | 272.01 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 628 | 272.09 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 19 |
| 658 | 272.19 | wind | 7 | 43200 | < th | dose independent | rect. | 1 | 17 |
| 673 | 272.24 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 19 |
| 714 | 272.35 | wind | 7 | 43200 | > th | dose independent | rect. | 1 | 17 |
| 724 | 272.40 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 751 | 272.56 | wind | 7 | 43200 | < th | dose independent | rect. | 21 | 21 |
| 752 | 272.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 756 | 272.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 760 | 272.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 787 | 272.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 811 | 272.70 | wind | 7 | 43200 | > th | dose independent | rect. | 21 | 21 |
| 838 | 272.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 842 | 272.81 | wind | 7 | 43200 | < th | dose independent | sin | 0 | NA |
| 849 | 272.83 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 14 |
| 896 | 272.92 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 906 | 272.95 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 14 |
| 909 | 272.95 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 929 | 272.97 | wind | 7 | 43200 | > th | dose independent | sin | 0 | NA |