BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0163300 Os06g0163300|AK058295
(322 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G45688.1 | chr1:17191502-17192870 FORWARD LENGTH=343 177 9e-45
AT5G42860.1 | chr5:17183339-17184857 REVERSE LENGTH=321 161 5e-40
AT3G24600.1 | chr3:8972195-8974867 REVERSE LENGTH=507 151 6e-37
AT4G35170.1 | chr4:16736839-16738186 FORWARD LENGTH=300 112 2e-25
AT2G41990.1 | chr2:17527396-17528527 FORWARD LENGTH=298 89 3e-18
AT3G08490.1 | chr3:2574105-2575125 REVERSE LENGTH=272 50 2e-06
>AT1G45688.1 | chr1:17191502-17192870 FORWARD LENGTH=343
Length = 342
Score = 177 bits (448), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 123/349 (35%), Positives = 164/349 (46%), Gaps = 41/349 (11%)
Query: 2 MHAKSESDVTSLAPSSPPRSPKRXXXXXXXXANYYVQSPSRESHDGGYKSSSMQATPVYN 61
MHAK++S+VTSLA SSP RSP+R YYVQSPSR+SHDG ++S +TPV +
Sbjct: 1 MHAKTDSEVTSLAASSPARSPRRPV--------YYVQSPSRDSHDGEKTATSFHSTPVLS 52
Query: 62 ---SPNEXXXXXXXXXXXXXXXXXXXXXTLRDGSRKA----GGERKALN-DKGWPECNVI 113
SP +L+ GSRK G +RK +K W EC VI
Sbjct: 53 PMGSPPHSHSSMGRHSRESSSSRFSG--SLKPGSRKVNPNDGSKRKGHGGEKQWKECAVI 110
Query: 114 EEEGPYEDLAGDTGLSRRCQXXXXXXXXXXXXXXXXXXXWGAARPYEPDVVVKSLTMDDF 173
EEEG +D D G+ RRC +GAA+P +P + VKS+T +
Sbjct: 111 EEEGLLDDGDRDGGVPRRCYVLAFIVGFFILFGFFSLILYGAAKPMKPKITVKSITFETL 170
Query: 174 YAGEGTDHSGVPTKLVTLNCSLHIAVYNPASMFGIHVTTGPIRLLYSEISIGVGQVRRYY 233
G D GV T ++T+N +L + N + FG+HVT+ PI L +S+I IG G V+++Y
Sbjct: 171 KIQAGQDAGGVGTDMITMNATLRMLYRNTGTFFGVHVTSTPIDLSFSQIKIGSGSVKKFY 230
Query: 234 QPRKSHRLVTAVVHGNKVPLYXXXXX-----------------------XXXXXXXXXVP 270
Q RKS R V V G K+PLY VP
Sbjct: 231 QGRKSERTVLVHVIGEKIPLYGSGSTLLPPAPPAPLPKPKKKKGAPVPIPDPPAPPAPVP 290
Query: 271 LTLDFDLTSRGYVIGKLVRVTHKVHVTCPIVVDAKKTKPIKFSKKACAV 319
+TL F + SR YV+GKLV+ + C I + K K C V
Sbjct: 291 MTLSFVVRSRAYVLGKLVQPKFYKKIECDINFEHKNLNKHIVITKNCTV 339
>AT5G42860.1 | chr5:17183339-17184857 REVERSE LENGTH=321
Length = 320
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 154/330 (46%), Gaps = 51/330 (15%)
Query: 2 MHAKSESDVTSLAPSSPPRSPKRXXXXXXXXANYYVQSPSRESHDGGYKSSSMQATPVYN 61
MHAK++S+VTSL+ SSP RSP+R Y+VQSPSR+SHDG ++S +TPV
Sbjct: 1 MHAKTDSEVTSLSASSPTRSPRRPA--------YFVQSPSRDSHDGEKTATSFHSTPVLT 52
Query: 62 SPNEXXXXXXXXXXXXXXXXXXXXXTLRDGSRKAGGERKALNDKGWPECNVIEEEGPYED 121
SP +GS++ G G + +IEEEG +D
Sbjct: 53 SPMGSPPHSHSSSSRFSKI---------NGSKRKG-------HAGEKQFAMIEEEGLLDD 96
Query: 122 LAGD---TGLSRRCQXXXXXXXXXXXXXXXXXXXWGAARPYEPDVVVKSLTMDDFYAGEG 178
GD L RRC + AA+P +P + VKS+T + G
Sbjct: 97 --GDREQEALPRRCYVLAFIVGFSLLFAFFSLILYAAAKPQKPKISVKSITFEQLKVQAG 154
Query: 179 TDHSGVPTKLVTLNCSLHIAVYNPASMFGIHVTTGPIRLLYSEISIGVGQVRRYYQPRKS 238
D G+ T ++T+N +L + N + FG+HVT+ PI L +S+I+IG G ++++YQ RKS
Sbjct: 155 QDAGGIGTDMITMNATLRMLYRNTGTFFGVHVTSSPIDLSFSQITIGSGSIKKFYQSRKS 214
Query: 239 HRLVTAVVHGNKVPLYXXXXXX----------------------XXXXXXXXVPLTLDFD 276
R V V G+K+PLY VP+ L+F
Sbjct: 215 QRTVVVNVLGDKIPLYGSGSTLVPPPPPAPIPKPKKKKGPIVIVEPPAPPAPVPMRLNFT 274
Query: 277 LTSRGYVIGKLVRVTHKVHVTCPIVVDAKK 306
+ SR YV+GKLV+ + C I + KK
Sbjct: 275 VRSRAYVLGKLVQPKFYKRIVCLINFEHKK 304
>AT3G24600.1 | chr3:8972195-8974867 REVERSE LENGTH=507
Length = 506
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 128/232 (55%), Gaps = 8/232 (3%)
Query: 91 GSRKAGGERKALNDKGWPEC-NVIEEEGPYEDLAGDTGLS-RRCQXXXXXXXXXXXXXXX 148
G R G R++ + WPE I E+ Y+D + GLS +C+
Sbjct: 277 GFRWKGSSRRS--NMYWPEKPYTINEDEVYDD---NRGLSVGQCRAVLVILGTVVVFSVF 331
Query: 149 XXXXWGAARPYEPDVVVKSLTMDDFYAGEGTDHSGVPTKLVTLNCSLHIAVYNPASMFGI 208
WGA+ P+ P V VKS+ + FY GEG D +GV TK+++ N S+ + + +PA FGI
Sbjct: 332 CSVLWGASHPFSPIVSVKSVDIHSFYYGEGIDRTGVATKILSFNSSVKVTIDSPAPYFGI 391
Query: 209 HVTTGPIRLLYSEISIGVGQVRRYYQPRKSHRLVTAVVHGNKVPLYXXXXXXXXXXXXXX 268
HV++ +L +S +++ GQ++ YYQPRKS + + G +VPLY
Sbjct: 392 HVSSSTFKLTFSALTLATGQLKSYYQPRKSKHISIVKLTGAEVPLYGAGPHLAASDKKGK 451
Query: 269 VPLTLDFDLTSRGYVIGKLVRVTHKVHVTCPIVVDAKKT-KPIKFSKKACAV 319
VP+ L+F++ SRG ++GKLV+ H+ HV+C + + KT KPI+F+ K C +
Sbjct: 452 VPVKLEFEIRSRGNLLGKLVKSKHENHVSCSFFISSSKTSKPIEFTHKTCKL 503
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 2 MHAKSESDVTSLAPSSPPRSPKRXXXXXXXXANYYVQSPSRESHDGGYKSSSMQATPVYN 61
M+ KS+SDVTSL SSP R YYVQSPSR+S KSSS+ T
Sbjct: 3 MYPKSDSDVTSLDLSSPKR------------PTYYVQSPSRDSD----KSSSVALTTHQT 46
Query: 62 SPNEXXXXXXXXXXXXXXXXXXXXXTLRDGSRKAGGERKALNDKGWPECNVIEEEGPYED 121
+P E + G RK WP +G YED
Sbjct: 47 TPTESPSHPSIASRVSNGGGGGF---------RWKGRRKYHGGIWWPADKEEGGDGRYED 97
Query: 122 LAGDT-GLS-RRCQXXXXXXXXXXXXXXXXXXXWGAARPYEPDVVVKSLTMDDFYAGEGT 179
L D G+S C+ +GA++ P V +K + + FY GEG+
Sbjct: 98 LYEDNRGVSIVTCRLILGVVATLSIFFLLCSVLFGASQSSPPIVYIKGVNVRSFYYGEGS 157
Query: 180 DHSGVPTKLVTLNCSLHIAVYNPASMFGIHVTTGPIRLLYS-EISIGVGQVRRYYQPRKS 238
D++GVPTK++ + CS+ I +NP+++FGIHV++ + L+YS + ++ +++ Y+QP++S
Sbjct: 158 DNTGVPTKIMNVKCSVVITTHNPSTLFGIHVSSTAVSLIYSRQFTLANARLKSYHQPKQS 217
Query: 239 HRLVTAVVHGNKVPLY 254
+ + G+KVPLY
Sbjct: 218 NHTSRINLIGSKVPLY 233
>AT4G35170.1 | chr4:16736839-16738186 FORWARD LENGTH=300
Length = 299
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 3/169 (1%)
Query: 153 WGAARPYEPDVVVKSLTMDDFYAGEGTDHSGVPTKLVTLNCSLHIAVYNPASMFGIHVTT 212
WG ++ + P +K + +++ G D SGV T ++TLN ++ I NPA+ F +HVT+
Sbjct: 129 WGVSKSFAPIATLKEMVLENLNVQSGNDQSGVLTDMLTLNSTVRILYRNPATFFTVHVTS 188
Query: 213 GPIRLLYSEISIGVGQVRRYYQPRKSHRLVTAVVHGNKVPLYX---XXXXXXXXXXXXXV 269
P++L YS++ + GQ+ + Q RKS R++ V G+++PLY +
Sbjct: 189 APLQLSYSQLILASGQMGEFSQRRKSERIIETKVFGDQIPLYGGVPALFGQRAEPDQVVL 248
Query: 270 PLTLDFDLTSRGYVIGKLVRVTHKVHVTCPIVVDAKKTKPIKFSKKACA 318
PL L F L +R YV+G+LV+ T ++ C I K K+C+
Sbjct: 249 PLNLTFTLRARAYVLGRLVKTTFHSNIKCSITFYGDKLGKTLDLSKSCS 297
>AT2G41990.1 | chr2:17527396-17528527 FORWARD LENGTH=298
Length = 297
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 153 WGAARPYEPDVVVKSLTMDDFYAGEGTDHSGVPTKLVTLNCSLHIAVYNPASMFGIHVTT 212
WGA++ Y P V VK + + D G D SGVPT +++LN ++ I NP++ F +HVT
Sbjct: 134 WGASKSYPPKVTVKGMLVRDLNLQAGNDLSGVPTDMLSLNSTVRIYYRNPSTFFAVHVTA 193
Query: 213 GPIRLLYSEISIGVGQVRRYYQPRKSHRLVTAVVHGNKVPLYXXXXXXXXXXXXXXVPLT 272
P+ L YS + + G++ ++ R V VV G+++PLY +PL
Sbjct: 194 SPLLLHYSNLLLSSGEMNKFTVGRNGETNVVTVVQGHQIPLY---GGVSFHLDTLSLPLN 250
Query: 273 LDFDLTSRGYVIGKLVRVTHKVHVTCPIVVDAK 305
L L S+ Y++G+LV + C +DA
Sbjct: 251 LTIVLHSKAYILGRLVTSKFYTRIICSFTLDAN 283
>AT3G08490.1 | chr3:2574105-2575125 REVERSE LENGTH=272
Length = 271
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%)
Query: 155 AARPYEPDVVVKSLTMDDFYAGEGTDHSGVPTKLVTLNCSLHIAVYNPASMFGIHVTTGP 214
A +P P++ + + F EG D GV TK +T NCS + + N +++FG+H+
Sbjct: 103 ATQPPHPNISFRIGRFNQFMLEEGVDSHGVSTKFLTFNCSTKLIIDNKSNVFGLHIHPPS 162
Query: 215 IRLLYSEISIGVGQVRRYY 233
I+ + ++ Q + Y
Sbjct: 163 IKFFFGPLNFAKAQGPKLY 181
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,027,354
Number of extensions: 209227
Number of successful extensions: 355
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 7
Length of query: 322
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 223
Effective length of database: 8,392,385
Effective search space: 1871501855
Effective search space used: 1871501855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)