Os03g0216500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0216500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 207.39 | 0.677 | 4.28 | 0.831 | 0.472 | -0.928 | 1.01 | 0.507 | -0.135 | 8.58 | 22.2 | 816 | -- | -- |
| 208.1 | 0.672 | 4.3 | 0.673 | 0.479 | -0.915 | 0.892 | -- | -0.18 | 8.53 | 22.3 | 847 | -- | -- |
| 210 | 0.675 | 4.29 | 0.777 | 0.5 | -0.935 | -- | 0.257 | -0.145 | 8.85 | 22.3 | 889 | -- | -- |
| 209.99 | 0.675 | 4.29 | 0.704 | 0.479 | -0.926 | -- | -- | -0.159 | 9.03 | 22.3 | 843 | -- | -- |
| 222.15 | 0.694 | 4.29 | 0.779 | -- | -1.02 | -- | 0.142 | -0.118 | -- | 22.2 | 801 | -- | -- |
| 244.72 | 0.733 | 4.36 | 0.369 | 0.653 | -- | 0.669 | -- | -0.48 | 9.22 | -- | -- | -- | -- |
| 246.2 | 0.735 | 4.36 | 0.395 | 0.648 | -- | -- | -- | -0.478 | 9.48 | -- | -- | -- | -- |
| 222.02 | 0.694 | 4.29 | 0.785 | -- | -1.04 | -- | -- | -0.104 | -- | 22.1 | 800 | -- | -- |
| 221.81 | 0.694 | 4.32 | -- | 0.493 | -0.787 | -- | -- | -0.287 | 9.04 | 22.2 | 817 | -- | -- |
| 270.88 | 0.769 | 4.38 | 0.391 | -- | -- | -- | -- | -0.476 | -- | -- | -- | -- | -- |
| 250.31 | 0.74 | 4.37 | -- | 0.647 | -- | -- | -- | -0.522 | 9.44 | -- | -- | -- | -- |
| 235.29 | 0.714 | 4.33 | -- | -- | -0.892 | -- | -- | -0.252 | -- | 22.2 | 793 | -- | -- |
| 274.91 | 0.774 | 4.39 | -- | -- | -- | -- | -- | -0.52 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 205.15 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 2 | 205.31 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 16 |
| 54 | 207.49 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 85 | 208.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 22 |
| 86 | 208.19 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 119 | 208.80 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 124 | 208.87 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 177 | 209.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 178 | 209.76 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 246 | 210.95 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 271 | 211.19 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 2 |
| 275 | 211.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 349 | 211.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 391 | 212.24 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 406 | 212.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 433 | 212.48 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 16 |
| 436 | 212.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 465 | 212.64 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 498 | 212.82 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 18 |
| 505 | 212.85 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 14 |
| 510 | 212.86 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 16 |
| 519 | 212.94 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 17 |
| 545 | 213.05 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 666 | 213.49 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 678 | 213.54 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 22 |
| 762 | 213.83 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 22 |
| 775 | 213.89 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 795 | 213.96 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 805 | 214.00 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 19 |
| 847 | 214.11 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 21 |
| 874 | 214.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 904 | 214.31 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 14 |
| 928 | 214.40 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 20 |
| 953 | 214.47 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 12 |