BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0216500 Os03g0216500|Os03g0216500
(350 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G08490.1 | chr3:2574105-2575125 REVERSE LENGTH=272 131 7e-31
AT3G24600.1 | chr3:8972195-8974867 REVERSE LENGTH=507 65 8e-11
AT4G35170.1 | chr4:16736839-16738186 FORWARD LENGTH=300 55 5e-08
AT1G45688.1 | chr1:17191502-17192870 FORWARD LENGTH=343 48 6e-06
>AT3G08490.1 | chr3:2574105-2575125 REVERSE LENGTH=272
Length = 271
Score = 131 bits (329), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 99/198 (50%), Gaps = 5/198 (2%)
Query: 141 RYVKLDPDAPCCCIVFQVAWRXXXXXXXXXXXXXXXTKPRDPGVTFKVGKIQQFSLGEGL 200
R V L IV QV WR T+P P ++F++G+ QF L EG+
Sbjct: 68 RLVPLGTSNSSWWIVLQVGWRFLFSLGVALLVFYIATQPPHPNISFRIGRFNQFMLEEGV 127
Query: 201 DGSGVITSFLSCNLTVAMAVDNHSRVFTLHVRPPRLDMSFGRFTFATSQGVEEEGSSYDV 260
D GV T FL+ N + + +DN S VF LH+ PP + FG FA +QG + G S++
Sbjct: 128 DSHGVSTKFLTFNCSTKLIIDNKSNVFGLHIHPPSIKFFFGPLNFAKAQGPKLYGLSHE- 186
Query: 261 GARGKRTVRLFVAAEGKPMYAAGRGMQDLLESGGGLPLAVTVRARSRYRMVGSLVRLSYR 320
T +L++A + MY AG M D+L S GLPL + S YR+V +++ Y
Sbjct: 187 ----STTFQLYIATTNRAMYGAGTEMNDMLLSRAGLPLILRTSIISDYRVVWNIINPKYH 242
Query: 321 HDAQCVVRLRRTPRRNNA 338
H +C++ L R ++
Sbjct: 243 HKVECLLLLADKERHSHV 260
>AT3G24600.1 | chr3:8972195-8974867 REVERSE LENGTH=507
Length = 506
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 7/171 (4%)
Query: 179 PRDPGVTFKVGKIQQFSLGEGLDGSGVITSFLSCNLTVAMAVDNHSRVFTLHVRPPRLDM 238
P P V+ K I F GEG+D +GV T LS N +V + +D+ + F +HV +
Sbjct: 341 PFSPIVSVKSVDIHSFYYGEGIDRTGVATKILSFNSSVKVTIDSPAPYFGIHVSSSTFKL 400
Query: 239 SFGRFTFATSQGVEEEGSSYDVGARGKRTVRLFVAAEGKPMYAAGRGMQDLLESGGGLPL 298
+F T AT Q SY + K + + P+Y AG + + G +P+
Sbjct: 401 TFSALTLATGQ-----LKSYYQPRKSKHISIVKLTGAEVPLYGAGPHLA-ASDKKGKVPV 454
Query: 299 AVTVRARSRYRMVGSLVRLSYRHDAQCVVRLRRTPRRNNAIDASGYTCSAI 349
+ RSR ++G LV+ + + C + + + + I+ + TC +
Sbjct: 455 KLEFEIRSRGNLLGKLVKSKHENHVSCSFFISSS-KTSKPIEFTHKTCKLV 504
>AT4G35170.1 | chr4:16736839-16738186 FORWARD LENGTH=300
Length = 299
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 7/148 (4%)
Query: 182 PGVTFKVGKIQQFSLGEGLDGSGVITSFLSCNLTVAMAVDNHSRVFTLHVRPPRLDMSFG 241
P T K ++ ++ G D SGV+T L+ N TV + N + FT+HV L +S+
Sbjct: 137 PIATLKEMVLENLNVQSGNDQSGVLTDMLTLNSTVRILYRNPATFFTVHVTSAPLQLSYS 196
Query: 242 RFTFATSQGVEEEGSSYDVGARGKRTVRLFVAAEGKPMYAAGRGM--QDLLESGGGLPLA 299
+ A+ Q E + + +R + V + P+Y + Q LPL
Sbjct: 197 QLILASGQMGE-----FSQRRKSERIIETKVFGDQIPLYGGVPALFGQRAEPDQVVLPLN 251
Query: 300 VTVRARSRYRMVGSLVRLSYRHDAQCVV 327
+T R+R ++G LV+ ++ + +C +
Sbjct: 252 LTFTLRARAYVLGRLVKTTFHSNIKCSI 279
>AT1G45688.1 | chr1:17191502-17192870 FORWARD LENGTH=343
Length = 342
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 178 KPRDPGVTFKVGKIQQFSLGEGLDGSGVITSFLSCNLTVAMAVDNHSRVFTLHVRPPRLD 237
KP P +T K + + G D GV T ++ N T+ M N F +HV +D
Sbjct: 154 KPMKPKITVKSITFETLKIQAGQDAGGVGTDMITMNATLRMLYRNTGTFFGVHVTSTPID 213
Query: 238 MSFGRFTFATSQGVEEEGSSYDVGARGKRTVRLFVAAEGKPMYAAG 283
+SF + S V++ + G + +RTV + V E P+Y +G
Sbjct: 214 LSFSQIKIG-SGSVKK----FYQGRKSERTVLVHVIGEKIPLYGSG 254
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,626,321
Number of extensions: 236240
Number of successful extensions: 491
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 488
Number of HSP's successfully gapped: 5
Length of query: 350
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 251
Effective length of database: 8,392,385
Effective search space: 2106488635
Effective search space used: 2106488635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)