Os02g0667600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os02g0667600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.82 | 0.422 | 7.53 | -0.823 | 0.651 | 0.914 | -0.745 | -1.58 | -1.14 | 3.99 | 14.7 | 333 | -- | -- |
| 82.27 | 0.422 | 7.5 | -0.575 | 0.661 | 0.916 | -0.407 | -- | -1.07 | 4.03 | 12.88 | 317 | -- | -- |
| 82.04 | 0.422 | 7.52 | -0.729 | 0.659 | 0.948 | -- | -0.963 | -1.12 | 4.21 | 14.7 | 348 | -- | -- |
| 82.69 | 0.424 | 7.5 | -0.573 | 0.668 | 0.935 | -- | -- | -1.07 | 4.2 | 13.66 | 334 | -- | -- |
| 89.61 | 0.441 | 7.53 | -0.723 | -- | 0.806 | -- | -0.742 | -1.1 | -- | 14.7 | 1136 | -- | -- |
| 90.87 | 0.447 | 7.48 | -0.382 | 0.417 | -- | -0.62 | -- | -0.943 | 3.27 | -- | -- | -- | -- |
| 92.06 | 0.449 | 7.48 | -0.37 | 0.418 | -- | -- | -- | -0.939 | 3.54 | -- | -- | -- | -- |
| 90.28 | 0.443 | 7.51 | -0.598 | -- | 0.829 | -- | -- | -1.07 | -- | 14.5 | 1145 | -- | -- |
| 90.45 | 0.443 | 7.48 | -- | 0.59 | 0.672 | -- | -- | -0.974 | 4.06 | 14.07 | 342 | -- | -- |
| 101.82 | 0.471 | 7.48 | -0.353 | -- | -- | -- | -- | -0.928 | -- | -- | -- | -- | -- |
| 95.67 | 0.458 | 7.47 | -- | 0.411 | -- | -- | -- | -0.898 | 3.54 | -- | -- | -- | -- |
| 98.62 | 0.463 | 7.49 | -- | -- | 0.58 | -- | -- | -0.972 | -- | 14.6 | 1131 | -- | -- |
| 105.1 | 0.479 | 7.47 | -- | -- | -- | -- | -- | -0.889 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.90 | temperature | 15 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 2 | 74.96 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 18 |
| 27 | 75.89 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 21 |
| 32 | 75.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 35 | 76.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 50 | 76.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 68 | 76.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 11 |
| 79 | 76.58 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 18 |
| 85 | 76.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 18 |
| 116 | 76.96 | temperature | 15 | 270 | > th | dose dependent | sin | 0 | NA |
| 150 | 77.18 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 16 |
| 192 | 77.46 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 194 | 77.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 439 | 78.80 | temperature | 15 | 720 | > th | dose dependent | sin | 5 | NA |
| 453 | 78.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 17 |
| 473 | 78.94 | temperature | 20 | 30 | > th | dose dependent | rect. | 10 | 11 |
| 557 | 79.20 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 7 |
| 561 | 79.21 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 577 | 79.26 | temperature | 30 | 10 | < th | dose independent | rect. | 6 | 21 |
| 580 | 79.26 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 9 |
| 631 | 79.42 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 650 | 79.46 | humidity | 60 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 664 | 79.51 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 18 |
| 666 | 79.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 668 | 79.52 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 15 |
| 693 | 79.58 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 715 | 79.64 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 2 |
| 717 | 79.64 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 22 |
| 857 | 79.92 | temperature | 30 | 10 | < th | dose independent | rect. | 9 | 18 |
| 869 | 79.93 | temperature | 25 | 90 | < th | dose independent | rect. | 7 | 18 |
| 880 | 79.94 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 11 |
| 907 | 79.97 | temperature | 15 | 30 | > th | dose dependent | rect. | 10 | 23 |
| 928 | 80.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 1 |