BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0667600 Os02g0667600|AK073500
(337 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41990.1 | chr2:17527396-17528527 FORWARD LENGTH=298 135 3e-32
AT4G35170.1 | chr4:16736839-16738186 FORWARD LENGTH=300 129 2e-30
AT3G24600.1 | chr3:8972195-8974867 REVERSE LENGTH=507 119 2e-27
AT5G42860.1 | chr5:17183339-17184857 REVERSE LENGTH=321 119 2e-27
AT1G45688.1 | chr1:17191502-17192870 FORWARD LENGTH=343 119 3e-27
AT3G08490.1 | chr3:2574105-2575125 REVERSE LENGTH=272 50 1e-06
>AT2G41990.1 | chr2:17527396-17528527 FORWARD LENGTH=298
Length = 297
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 148/324 (45%), Gaps = 39/324 (12%)
Query: 4 HAKTDSDVTSL--AXXXXXXXXXXXAYYVLSPAASHPDXXXXXXXXXXXXXXXXXXEKMS 61
HAKTDS+ TS+ A YYV SP+ EKMS
Sbjct: 2 HAKTDSEATSIDAAALSPPRSAIRPLYYVQSPS-------------------NHDVEKMS 42
Query: 62 F-AGSTPAESPLHYHYHHSGAAVHHSRESSTGRLLFSDQLRSGAAAGVPWRRLXXXXXXX 120
F +G + SP H HY+H + +HHSRESST R FSD+ A + ++ +
Sbjct: 43 FGSGCSLMGSPTHPHYYHC-SPIHHSRESSTSR--FSDR------ALLSYKSIRERRRYI 93
Query: 121 XXXXXXXXXXXXXXXXXQWRCYXXXXXXXXXXXXXXXXXXWGASKSYKPHVVVKSVVFET 180
R Y WGASKSY P V VK ++
Sbjct: 94 NDGDDKTDGGDDDDPFRNVRLYVWLLLSVIFLFTVFSLILWGASKSYPPKVTVKGMLVRD 153
Query: 181 YHIQGGTDRTGVPTKMMSVNATVRLRFRNRGTFFSLHVTSTPFHLFYDDLTVATGHMAEF 240
++Q G D +GVPT M+S+N+TVR+ +RN TFF++HVT++P L Y +L +++G M +F
Sbjct: 154 LNLQAGNDLSGVPTDMLSLNSTVRIYYRNPSTFFAVHVTASPLLLHYSNLLLSSGEMNKF 213
Query: 241 YQPXXXXXXXXXXXXXKQVPLYGAGAELHSKPNNGRLGPAVVPVRMAFVLRARAHILGLL 300
Q+PLYG G H L +P+ + VL ++A+ILG L
Sbjct: 214 TVGRNGETNVVTVVQGHQIPLYG-GVSFH-------LDTLSLPLNLTIVLHSKAYILGRL 265
Query: 301 VRSKFYRRVLCRLDVREASLGKPV 324
V SKFY R++C + L K +
Sbjct: 266 VTSKFYTRIICSFTLDANHLPKSI 289
>AT4G35170.1 | chr4:16736839-16738186 FORWARD LENGTH=300
Length = 299
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 98/176 (55%), Gaps = 7/176 (3%)
Query: 161 WGASKSYKPHVVVKSVVFETYHIQGGTDRTGVPTKMMSVNATVRLRFRNRGTFFSLHVTS 220
WG SKS+ P +K +V E ++Q G D++GV T M+++N+TVR+ +RN TFF++HVTS
Sbjct: 129 WGVSKSFAPIATLKEMVLENLNVQSGNDQSGVLTDMLTLNSTVRILYRNPATFFTVHVTS 188
Query: 221 TPFHLFYDDLTVATGHMAEFYQPXXXXXXXXXXXXXKQVPLYGAGAELHSKPNNGRLGP- 279
P L Y L +A+G M EF Q Q+PLYG L + R P
Sbjct: 189 APLQLSYSQLILASGQMGEFSQRRKSERIIETKVFGDQIPLYGGVPALFGQ----RAEPD 244
Query: 280 -AVVPVRMAFVLRARAHILGLLVRSKFYRRVLCRLDVREASLGKPVHGVAADCEYH 334
V+P+ + F LRARA++LG LV++ F+ + C + LGK + ++ C H
Sbjct: 245 QVVLPLNLTFTLRARAYVLGRLVKTTFHSNIKCSITFYGDKLGKTLD-LSKSCSDH 299
>AT3G24600.1 | chr3:8972195-8974867 REVERSE LENGTH=507
Length = 506
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 161 WGASKSYKPHVVVKSVVFETYHIQGGTDRTGVPTKMMSVNATVRLRFRNRGTFFSLHVTS 220
WGAS + P V VKSV +++ G DRTGV TK++S N++V++ + +F +HV+S
Sbjct: 336 WGASHPFSPIVSVKSVDIHSFYYGEGIDRTGVATKILSFNSSVKVTIDSPAPYFGIHVSS 395
Query: 221 TPFHLFYDDLTVATGHMAEFYQPXXXXXXXXXXXXXKQVPLYGAGAELHSKPNNGRLGPA 280
+ F L + LT+ATG + +YQP +VPLYGAG L + G+
Sbjct: 396 STFKLTFSALTLATGQLKSYYQPRKSKHISIVKLTGAEVPLYGAGPHLAASDKKGK---- 451
Query: 281 VVPVRMAFVLRARAHILGLLVRSKFYRRVLCRLDVREASLGKPVHGVAADCE 332
VPV++ F +R+R ++LG LV+SK V C + + KP+ C+
Sbjct: 452 -VPVKLEFEIRSRGNLLGKLVKSKHENHVSCSFFISSSKTSKPIEFTHKTCK 502
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 161 WGASKSYKPHVVVKSVVFETYHIQGGTDRTGVPTKMMSVNATVRLRFRNRGTFFSLHVTS 220
+GAS+S P V +K V +++ G+D TGVPTK+M+V +V + N T F +HV+S
Sbjct: 131 FGASQSSPPIVYIKGVNVRSFYYGEGSDNTGVPTKIMNVKCSVVITTHNPSTLFGIHVSS 190
Query: 221 TPFHLFYD-DLTVATGHMAEFYQPXXXXXXXXXXXXXKQVPLYGAGAELHSKPNNG 275
T L Y T+A + ++QP +VPLYGAGAEL + N+G
Sbjct: 191 TAVSLIYSRQFTLANARLKSYHQPKQSNHTSRINLIGSKVPLYGAGAELVASDNSG 246
>AT5G42860.1 | chr5:17183339-17184857 REVERSE LENGTH=321
Length = 320
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 17/179 (9%)
Query: 161 WGASKSYKPHVVVKSVVFETYHIQGGTDRTGVPTKMMSVNATVRLRFRNRGTFFSLHVTS 220
+ A+K KP + VKS+ FE +Q G D G+ T M+++NAT+R+ +RN GTFF +HVTS
Sbjct: 129 YAAAKPQKPKISVKSITFEQLKVQAGQDAGGIGTDMITMNATLRMLYRNTGTFFGVHVTS 188
Query: 221 TPFHLFYDDLTVATGHMAEFYQPXXXXXXXXXXXXXKQVPLYGAGAEL------HSKPNN 274
+P L + +T+ +G + +FYQ ++PLYG+G+ L P
Sbjct: 189 SPIDLSFSQITIGSGSIKKFYQSRKSQRTVVVNVLGDKIPLYGSGSTLVPPPPPAPIPKP 248
Query: 275 GRLGPAVVPV-----------RMAFVLRARAHILGLLVRSKFYRRVLCRLDVREASLGK 322
+ +V V R+ F +R+RA++LG LV+ KFY+R++C ++ L K
Sbjct: 249 KKKKGPIVIVEPPAPPAPVPMRLNFTVRSRAYVLGKLVQPKFYKRIVCLINFEHKKLSK 307
>AT1G45688.1 | chr1:17191502-17192870 FORWARD LENGTH=343
Length = 342
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 101/180 (56%), Gaps = 18/180 (10%)
Query: 161 WGASKSYKPHVVVKSVVFETYHIQGGTDRTGVPTKMMSVNATVRLRFRNRGTFFSLHVTS 220
+GA+K KP + VKS+ FET IQ G D GV T M+++NAT+R+ +RN GTFF +HVTS
Sbjct: 150 YGAAKPMKPKITVKSITFETLKIQAGQDAGGVGTDMITMNATLRMLYRNTGTFFGVHVTS 209
Query: 221 TPFHLFYDDLTVATGHMAEFYQPXXXXXXXXXXXXXKQVPLYGAGAE------------- 267
TP L + + + +G + +FYQ +++PLYG+G+
Sbjct: 210 TPIDLSFSQIKIGSGSVKKFYQGRKSERTVLVHVIGEKIPLYGSGSTLLPPAPPAPLPKP 269
Query: 268 -----LHSKPNNGRLGPAVVPVRMAFVLRARAHILGLLVRSKFYRRVLCRLDVREASLGK 322
+ PA VP+ ++FV+R+RA++LG LV+ KFY+++ C ++ +L K
Sbjct: 270 KKKKGAPVPIPDPPAPPAPVPMTLSFVVRSRAYVLGKLVQPKFYKKIECDINFEHKNLNK 329
>AT3G08490.1 | chr3:2574105-2575125 REVERSE LENGTH=272
Length = 271
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 4/151 (2%)
Query: 163 ASKSYKPHVVVKSVVFETYHIQGGTDRTGVPTKMMSVNATVRLRFRNRGTFFSLHVTSTP 222
A++ P++ + F + ++ G D GV TK ++ N + +L N+ F LH+
Sbjct: 103 ATQPPHPNISFRIGRFNQFMLEEGVDSHGVSTKFLTFNCSTKLIIDNKSNVFGLHIHPPS 162
Query: 223 FHLFYDDLTVATGHMAEFYQPXXXXXXXXXXXXXKQVPLYGAGAELHSKPNNGRLGPAVV 282
F+ L A + Y +YGAG E+ N+ L A +
Sbjct: 163 IKFFFGPLNFAKAQGPKLYGLSHESTTFQLYIATTNRAMYGAGTEM----NDMLLSRAGL 218
Query: 283 PVRMAFVLRARAHILGLLVRSKFYRRVLCRL 313
P+ + + + ++ ++ K++ +V C L
Sbjct: 219 PLILRTSIISDYRVVWNIINPKYHHKVECLL 249
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,250,978
Number of extensions: 167414
Number of successful extensions: 342
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 8
Length of query: 337
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 238
Effective length of database: 8,392,385
Effective search space: 1997387630
Effective search space used: 1997387630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)