BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0667600 Os02g0667600|AK073500
(337 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0667600 Harpin-induced 1 domain containing protein 491 e-139
Os04g0689500 Conserved hypothetical protein 151 8e-37
Os04g0430600 Conserved hypothetical protein 141 7e-34
Os01g0228500 Harpin-induced 1 domain containing protein 123 2e-28
Os06g0163300 Harpin-induced 1 domain containing protein 108 6e-24
>Os02g0667600 Harpin-induced 1 domain containing protein
Length = 337
Score = 491 bits (1264), Expect = e-139, Method: Compositional matrix adjust.
Identities = 253/337 (75%), Positives = 253/337 (75%)
Query: 1 MARHAKTDSDVTSLAXXXXXXXXXXXAYYVLSPAASHPDXXXXXXXXXXXXXXXXXXEKM 60
MARHAKTDSDVTSLA AYYVLSPAASHPD EKM
Sbjct: 1 MARHAKTDSDVTSLAPSSPPRSPRRSAYYVLSPAASHPDVVVASGGAGGGGGGVAAAEKM 60
Query: 61 SFAGSTPAESPLHYHYHHSGAAVHHSRESSTGRLLFSDQLRSGAAAGVPWRRLXXXXXXX 120
SFAGSTPAESPLHYHYHHSGAAVHHSRESSTGRLLFSDQLRSGAAAGVPWRRL
Sbjct: 61 SFAGSTPAESPLHYHYHHSGAAVHHSRESSTGRLLFSDQLRSGAAAGVPWRRLAQGSGAG 120
Query: 121 XXXXXXXXXXXXXXXXXQWRCYXXXXXXXXXXXXXXXXXXWGASKSYKPHVVVKSVVFET 180
QWRCY WGASKSYKPHVVVKSVVFET
Sbjct: 121 SVGDDDDDEGGLAGAASQWRCYALGAFAFVAVFAFFLLVLWGASKSYKPHVVVKSVVFET 180
Query: 181 YHIQGGTDRTGVPTKMMSVNATVRLRFRNRGTFFSLHVTSTPFHLFYDDLTVATGHMAEF 240
YHIQGGTDRTGVPTKMMSVNATVRLRFRNRGTFFSLHVTSTPFHLFYDDLTVATGHMAEF
Sbjct: 181 YHIQGGTDRTGVPTKMMSVNATVRLRFRNRGTFFSLHVTSTPFHLFYDDLTVATGHMAEF 240
Query: 241 YQPXXXXXXXXXXXXXKQVPLYGAGAELHSKPNNGRLGPAVVPVRMAFVLRARAHILGLL 300
YQP KQVPLYGAGAELHSKPNNGRLGPAVVPVRMAFVLRARAHILGLL
Sbjct: 241 YQPRRSGRVVTVSVVGKQVPLYGAGAELHSKPNNGRLGPAVVPVRMAFVLRARAHILGLL 300
Query: 301 VRSKFYRRVLCRLDVREASLGKPVHGVAADCEYHDGR 337
VRSKFYRRVLCRLDVREASLGKPVHGVAADCEYHDGR
Sbjct: 301 VRSKFYRRVLCRLDVREASLGKPVHGVAADCEYHDGR 337
>Os04g0689500 Conserved hypothetical protein
Length = 348
Score = 151 bits (381), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 109/344 (31%), Positives = 151/344 (43%), Gaps = 45/344 (13%)
Query: 4 HAKTDSDVTSLAXXXXXXXXXXXA----YYVLSPAASHPDXXXXXXXXXXXXXXXXXXEK 59
HAKTDS+VTSLA YYV SP+ D
Sbjct: 35 HAKTDSEVTSLAPSSPPRSPTSRGGRPVYYVQSPSRDSHDGEKTATSVH----------- 83
Query: 60 MSFAGSTPAESPLHYHYHHSGAAVHHSRESSTGRLL--------FSDQLRSGAAAGVPWR 111
STPA SP+ H G R+SS+ R S R GA AG W+
Sbjct: 84 -----STPALSPMGSPRHSVG------RDSSSSRFSGHPKRKGDKSSSGRKGAPAGKGWQ 132
Query: 112 RLXXXXXXXXXXXXXXXXXXXXXXXXQWRC--YXXXXXXXXXXXXXXXXXXWGASKSYKP 169
+ RC + WGAS+S KP
Sbjct: 133 EIGVIEEEGLLDDEDERRGIPK------RCKYFLIFVLGFVVLFSFFALVLWGASRSQKP 186
Query: 170 HVVVKSVVFETYHIQGGTDRTGVPTKMMSVNATVRLRFRNRGTFFSLHVTSTPFHLFYDD 229
+V+KS+ F+ + IQ GTD + VPT M + N+TV+L +RN GTFF +HVT+ PF L Y
Sbjct: 187 QIVIKSITFDNFIIQAGTDASLVPTDMATTNSTVKLTYRNTGTFFGIHVTADPFTLSYSQ 246
Query: 230 LTVATGHMAEFYQPXXXXXXXXXXXXXKQVPLYGAGAELHSKPNNGRLGPAVVPVRMAFV 289
LT+A+G + +FYQ +VPLYG G L + +G + P VP+ +
Sbjct: 247 LTLASGDLNKFYQARSSRRTVSVGVMGNKVPLYGGGPTLTAGKGSGSMAP--VPMILRTT 304
Query: 290 LRARAHILGLLVRSKFYRRVLCRLDVREASLGKPVHGVAADCEY 333
+ +RA++LG LV+ KF R + C++ + A L KP+ + C Y
Sbjct: 305 VHSRAYVLGALVKPKFTRAIECKVLMNPAKLNKPIS-LDKSCIY 347
>Os04g0430600 Conserved hypothetical protein
Length = 374
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 100/164 (60%), Gaps = 1/164 (0%)
Query: 161 WGASKSYKPHVVVKSVVFETYHIQGGTDRTGVPTKMMSVNATVRLRFRNRGTFFSLHVTS 220
WGAS + KP V + S+ F + IQ GTD + VPT++ +VNATVR+ FRN G+FF +HVT+
Sbjct: 203 WGASHNQKPVVSINSITFHNFVIQAGTDASLVPTELSTVNATVRMTFRNTGSFFGVHVTA 262
Query: 221 TPFHLFYDDLTVATGHMAEFYQPXXXXXXXXXXXXXKQVPLYGAGAELHSKPNNGRLGPA 280
P L+Y L +A+G++ FYQ +VPLYG G+ L S P G PA
Sbjct: 263 EPLTLYYYQLLMASGNVKYFYQSRKSSRHVAVAVVGDKVPLYGGGSGLSSTPVKG-APPA 321
Query: 281 VVPVRMAFVLRARAHILGLLVRSKFYRRVLCRLDVREASLGKPV 324
VP+++A R+RA +LG LV+ KF V C + + A LGKPV
Sbjct: 322 PVPLQLAVRFRSRAFVLGKLVKPKFLTNVQCSVRLDVAKLGKPV 365
>Os01g0228500 Harpin-induced 1 domain containing protein
Length = 330
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 148/352 (42%), Gaps = 45/352 (12%)
Query: 3 RHAKTDSDVTSLAXXXXXXX--XXXXAYYV-LSPA-ASHPDXXXXXXXXXXXXXXXXXXE 58
+ A ++SD+TSLA AYYV +SP+ SH D +
Sbjct: 2 KPATSESDMTSLATSSPSRSPKAAAAAYYVQISPSRDSHDDDG----------------D 45
Query: 59 KMSFAGSTPA--ESPLHYHYHHSGAAVHHSRESSTGRLLFSDQLRSGAAAGVP------- 109
K +TP SPL HHS + HSR SS R FS LRS +
Sbjct: 46 KSPSTQATPVYNNSPLDSPSHHSSSFGRHSRVSSASR--FSGNLRSASGRSRLGGGGGRR 103
Query: 110 ------WRRLXXXXXXXXXXXXXXXXXXXXXXXXQWRCYXXXX--XXXXXXXXXXXXXXW 161
WR + RC W
Sbjct: 104 RLGAKGWRDVDAIIDEEEEGAYDEFDDDDDGGYEPSRCCVLAFRFSLLALAFTLVCLIVW 163
Query: 162 GASKSYKPHVVVKSVVFETYHIQGGTDRTGVPTKMMSVNATVRLRFRNRGTFFSLHVTST 221
G ++ YKP V+VKS+ ++ G DRTGVPTK++++N ++++ N T F +HV+ST
Sbjct: 164 GIARHYKPGVLVKSLTVGNFYAGEGIDRTGVPTKLVTMNCSLQINVHNPSTMFGIHVSST 223
Query: 222 PFHLFYDDLTVATGHMAEFYQPXXXXXXXXXXXXXKQVPLYGAGAELHSKPNNGRLGPAV 281
+ + + +A G + +FYQP +++PLYGAG E + N G
Sbjct: 224 SIQILFSQIAIANGQLEKFYQPRSSHHVASAIVHGEKIPLYGAG-ETFALSNAG----GA 278
Query: 282 VPVRMAFVLRARAHILGLLVRSKFYRRVLCRLDVREASLGKPVHGVAADCEY 333
VP+ + V+RAR +++G LVR +RV C + + S KP+ + + C Y
Sbjct: 279 VPLTLDLVVRARGYVIGKLVRVTHTKRVKCPVVIDSGS-SKPIRFIQSACSY 329
>Os06g0163300 Harpin-induced 1 domain containing protein
Length = 322
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 6/171 (3%)
Query: 161 WGASKSYKPHVVVKSVVFETYHIQGGTDRTGVPTKMMSVNATVRLRFRNRGTFFSLHVTS 220
WGA++ Y+P VVVKS+ + ++ GTD +GVPTK++++N ++ + N + F +HVT+
Sbjct: 153 WGAARPYEPDVVVKSLTMDDFYAGEGTDHSGVPTKLVTLNCSLHIAVYNPASMFGIHVTT 212
Query: 221 TPFHLFYDDLTVATGHMAEFYQPXXXXXXXXXXXXXKQVPLYGAGAELHSKPNNGRLGPA 280
P L Y ++++ G + +YQP +VPLYGAG L + G
Sbjct: 213 GPIRLLYSEISIGVGQVRRYYQPRKSHRLVTAVVHGNKVPLYGAGGGLMLSSSGG----- 267
Query: 281 VVPVRMAFVLRARAHILGLLVRSKFYRRVLCRLDVREASLGKPVHGVAADC 331
VP+ + F L +R +++G LVR V C + V +A KP+ C
Sbjct: 268 AVPLTLDFDLTSRGYVIGKLVRVTHKVHVTCPI-VVDAKKTKPIKFSKKAC 317
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,797,199
Number of extensions: 295761
Number of successful extensions: 660
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 654
Number of HSP's successfully gapped: 5
Length of query: 337
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 236
Effective length of database: 11,762,187
Effective search space: 2775876132
Effective search space used: 2775876132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)