Os01g0228500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os01g0228500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.39 | 0.449 | 6.95 | 1.13 | 0.241 | -1.67 | 0.357 | -0.766 | -0.54 | 8.35 | 8.349 | 251 | 17.3 | 18.9 |
| 91.8 | 0.446 | 6.94 | 1.17 | 0.255 | -1.63 | 0.303 | -- | -0.53 | 7.91 | 7.705 | 239 | 17.4 | 18.8 |
| 91.6 | 0.446 | 6.94 | 1.15 | 0.237 | -1.63 | -- | -0.448 | -0.531 | 8.74 | 8.428 | 246 | 17.4 | 18.8 |
| 91.72 | 0.446 | 6.94 | 1.19 | 0.245 | -1.61 | -- | -- | -0.522 | 8.61 | 8.358 | 239 | 17.5 | 18.7 |
| 93.89 | 0.451 | 6.96 | 1.15 | -- | -1.51 | -- | -0.49 | -0.545 | -- | 9.072 | 245 | 17.2 | 19 |
| 132.06 | 0.539 | 6.98 | 1.01 | 0.514 | -- | -0.387 | -- | -0.64 | 16.8 | -- | -- | -- | -- |
| 132.45 | 0.539 | 6.98 | 1.01 | 0.511 | -- | -- | -- | -0.642 | 16.8 | -- | -- | -- | -- |
| 94.06 | 0.452 | 6.95 | 1.18 | -- | -1.48 | -- | -- | -0.534 | -- | 8.783 | 238 | 17.3 | 18.9 |
| 127.03 | 0.525 | 6.97 | -- | 0.236 | -1.39 | -- | -- | -0.656 | 8.09 | 5.06 | 217 | 17.7 | 18.7 |
| 146.27 | 0.565 | 6.98 | 0.986 | -- | -- | -- | -- | -0.655 | -- | -- | -- | -- | -- |
| 159.08 | 0.59 | 7.01 | -- | 0.493 | -- | -- | -- | -0.754 | 16.9 | -- | -- | -- | -- |
| 128.12 | 0.527 | 6.99 | -- | -- | -1.28 | -- | -- | -0.72 | -- | 1.424 | 200 | 17.4 | 19.3 |
| 171.92 | 0.612 | 7 | -- | -- | -- | -- | -- | -0.765 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.16 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 8 | 95.57 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 19 | 98.12 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 21 |
| 39 | 99.57 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 15 | 3 |
| 40 | 99.57 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 15 | 16 |
| 43 | 99.71 | radiation | 1.0 | 90 | > th | dose independent | sin | 15 | NA |
| 46 | 99.82 | radiation | 1.0 | 90 | < th | dose independent | sin | 15 | NA |
| 47 | 99.91 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 15 | 18 |
| 51 | 99.97 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 13 | 3 |
| 70 | 100.47 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 3 |
| 75 | 100.54 | radiation | 10.0 | 90 | < th | dose dependent | sin | 14 | NA |
| 92 | 100.84 | radiation | 1.0 | 30 | > th | dose independent | rect. | 15 | 4 |
| 108 | 100.96 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 15 | 3 |
| 135 | 101.45 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 140 | 101.60 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 14 |
| 157 | 101.95 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 3 |
| 160 | 102.03 | humidity | 70.0 | 30 | < th | dose independent | rect. | 15 | 3 |
| 168 | 102.20 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 187 | 102.39 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 5 |
| 239 | 102.89 | radiation | 1.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 267 | 103.07 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 3 |
| 268 | 103.07 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 3 |
| 276 | 103.14 | humidity | 80.0 | 10 | < th | dose dependent | sin | 14 | NA |
| 284 | 103.19 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 3 |
| 335 | 103.40 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 345 | 103.52 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 3 |
| 347 | 103.52 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 3 |
| 349 | 103.52 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 21 |
| 356 | 103.59 | humidity | 70.0 | 270 | < th | dose independent | rect. | 13 | 3 |
| 383 | 103.75 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 8 |
| 392 | 103.83 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 3 |
| 393 | 103.83 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 21 |
| 408 | 103.93 | humidity | 70.0 | 270 | < th | dose independent | rect. | 12 | 5 |
| 427 | 104.09 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 3 |
| 442 | 104.22 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 5 |
| 444 | 104.22 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 5 |
| 510 | 104.73 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 521 | 104.77 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 13 | 3 |
| 524 | 104.80 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 8 |
| 548 | 104.98 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 550 | 104.98 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 12 | 5 |
| 551 | 104.98 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 557 | 105.02 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 19 |
| 563 | 105.05 | temperature | 25.0 | 30 | > th | dose independent | rect. | 15 | 3 |
| 597 | 105.17 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 5 |
| 616 | 105.30 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 662 | 105.56 | wind | 9.0 | 270 | < th | dose dependent | rect. | 13 | 3 |
| 674 | 105.61 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 10 |
| 723 | 105.96 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 15 | 2 |
| 729 | 106.00 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 21 |
| 732 | 106.00 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 21 |
| 774 | 106.24 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 15 | 16 |
| 793 | 106.35 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 810 | 106.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 19 |
| 812 | 106.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 19 |
| 831 | 106.52 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 20 |
| 844 | 106.61 | wind | 9.0 | 90 | < th | dose dependent | rect. | 15 | 2 |
| 860 | 106.72 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 21 |
| 874 | 106.83 | wind | 7.0 | 10 | < th | dose independent | rect. | 15 | 3 |
| 906 | 106.98 | temperature | 20.0 | 270 | > th | dose independent | rect. | 7 | 15 |
| 971 | 107.33 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 976 | 107.33 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 21 |