BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0228500 Os01g0228500|AK119627
(330 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24600.1 | chr3:8972195-8974867 REVERSE LENGTH=507 158 3e-39
AT4G35170.1 | chr4:16736839-16738186 FORWARD LENGTH=300 119 2e-27
AT1G45688.1 | chr1:17191502-17192870 FORWARD LENGTH=343 112 2e-25
AT5G42860.1 | chr5:17183339-17184857 REVERSE LENGTH=321 107 9e-24
AT2G41990.1 | chr2:17527396-17528527 FORWARD LENGTH=298 97 1e-20
AT3G08490.1 | chr3:2574105-2575125 REVERSE LENGTH=272 65 5e-11
>AT3G24600.1 | chr3:8972195-8974867 REVERSE LENGTH=507
Length = 506
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 110/167 (65%), Gaps = 1/167 (0%)
Query: 162 VWGIARHYKPGVLVKSLTVGNFYAGEGIDRTGVPTKLVTMNCSLQINVHNPSTMFGIHVS 221
+WG + + P V VKS+ + +FY GEGIDRTGV TK+++ N S+++ + +P+ FGIHVS
Sbjct: 335 LWGASHPFSPIVSVKSVDIHSFYYGEGIDRTGVATKILSFNSSVKVTIDSPAPYFGIHVS 394
Query: 222 STSIQILFSQIAIANGQLEKFYQPRSSHHVASAIVHGEKIPLYGAGETFALSNAGGAVPL 281
S++ ++ FS + +A GQL+ +YQPR S H++ + G ++PLYGAG A S+ G VP+
Sbjct: 395 SSTFKLTFSALTLATGQLKSYYQPRKSKHISIVKLTGAEVPLYGAGPHLAASDKKGKVPV 454
Query: 282 TLDLVVRARGYVIGKLVRVTHTKRVKCPVVIDSG-SSKPIRFIQSAC 327
L+ +R+RG ++GKLV+ H V C I S +SKPI F C
Sbjct: 455 KLEFEIRSRGNLLGKLVKSKHENHVSCSFFISSSKTSKPIEFTHKTC 501
Score = 120 bits (302), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 86/125 (68%), Gaps = 1/125 (0%)
Query: 158 VCLIVWGIARHYKPGVLVKSLTVGNFYAGEGIDRTGVPTKLVTMNCSLQINVHNPSTMFG 217
+C +++G ++ P V +K + V +FY GEG D TGVPTK++ + CS+ I HNPST+FG
Sbjct: 126 LCSVLFGASQSSPPIVYIKGVNVRSFYYGEGSDNTGVPTKIMNVKCSVVITTHNPSTLFG 185
Query: 218 IHVSSTSIQILFS-QIAIANGQLEKFYQPRSSHHVASAIVHGEKIPLYGAGETFALSNAG 276
IHVSST++ +++S Q +AN +L+ ++QP+ S+H + + G K+PLYGAG S+
Sbjct: 186 IHVSSTAVSLIYSRQFTLANARLKSYHQPKQSNHTSRINLIGSKVPLYGAGAELVASDNS 245
Query: 277 GAVPL 281
G VP+
Sbjct: 246 GGVPV 250
>AT4G35170.1 | chr4:16736839-16738186 FORWARD LENGTH=300
Length = 299
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Query: 159 CLIVWGIARHYKPGVLVKSLTVGNFYAGEGIDRTGVPTKLVTMNCSLQINVHNPSTMFGI 218
CLI+WG+++ + P +K + + N G D++GV T ++T+N +++I NP+T F +
Sbjct: 125 CLILWGVSKSFAPIATLKEMVLENLNVQSGNDQSGVLTDMLTLNSTVRILYRNPATFFTV 184
Query: 219 HVSSTSIQILFSQIAIANGQLEKFYQPRSSHHVASAIVHGEKIPLYGAGETFALSNAGG- 277
HV+S +Q+ +SQ+ +A+GQ+ +F Q R S + V G++IPLYG A
Sbjct: 185 HVTSAPLQLSYSQLILASGQMGEFSQRRKSERIIETKVFGDQIPLYGGVPALFGQRAEPD 244
Query: 278 --AVPLTLDLVVRARGYVIGKLVRVTHTKRVKCPVVI 312
+PL L +RAR YV+G+LV+ T +KC +
Sbjct: 245 QVVLPLNLTFTLRARAYVLGRLVKTTFHSNIKCSITF 281
>AT1G45688.1 | chr1:17191502-17192870 FORWARD LENGTH=343
Length = 342
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 98/194 (50%), Gaps = 23/194 (11%)
Query: 160 LIVWGIARHYKPGVLVKSLTVGNFYAGEGIDRTGVPTKLVTMNCSLQINVHNPSTMFGIH 219
LI++G A+ KP + VKS+T G D GV T ++TMN +L++ N T FG+H
Sbjct: 147 LILYGAAKPMKPKITVKSITFETLKIQAGQDAGGVGTDMITMNATLRMLYRNTGTFFGVH 206
Query: 220 VSSTSIQILFSQIAIANGQLEKFYQPRSSHHVASAIVHGEKIPLYGAGET---------- 269
V+ST I + FSQI I +G ++KFYQ R S V GEKIPLYG+G T
Sbjct: 207 VTSTPIDLSFSQIKIGSGSVKKFYQGRKSERTVLVHVIGEKIPLYGSGSTLLPPAPPAPL 266
Query: 270 -------------FALSNAGGAVPLTLDLVVRARGYVIGKLVRVTHTKRVKCPVVIDSGS 316
VP+TL VVR+R YV+GKLV+ K+++C + + +
Sbjct: 267 PKPKKKKGAPVPIPDPPAPPAPVPMTLSFVVRSRAYVLGKLVQPKFYKKIECDINFEHKN 326
Query: 317 SKPIRFIQSACSYT 330
I C+ T
Sbjct: 327 LNKHIVITKNCTVT 340
>AT5G42860.1 | chr5:17183339-17184857 REVERSE LENGTH=321
Length = 320
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 89/173 (51%), Gaps = 22/173 (12%)
Query: 160 LIVWGIARHYKPGVLVKSLTVGNFYAGEGIDRTGVPTKLVTMNCSLQINVHNPSTMFGIH 219
LI++ A+ KP + VKS+T G D G+ T ++TMN +L++ N T FG+H
Sbjct: 126 LILYAAAKPQKPKISVKSITFEQLKVQAGQDAGGIGTDMITMNATLRMLYRNTGTFFGVH 185
Query: 220 VSSTSIQILFSQIAIANGQLEKFYQPRSSHHVASAIVHGEKIPLYGAGETFA-------- 271
V+S+ I + FSQI I +G ++KFYQ R S V G+KIPLYG+G T
Sbjct: 186 VTSSPIDLSFSQITIGSGSIKKFYQSRKSQRTVVVNVLGDKIPLYGSGSTLVPPPPPAPI 245
Query: 272 --------------LSNAGGAVPLTLDLVVRARGYVIGKLVRVTHTKRVKCPV 310
VP+ L+ VR+R YV+GKLV+ KR+ C +
Sbjct: 246 PKPKKKKGPIVIVEPPAPPAPVPMRLNFTVRSRAYVLGKLVQPKFYKRIVCLI 298
>AT2G41990.1 | chr2:17527396-17528527 FORWARD LENGTH=298
Length = 297
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 93/156 (59%), Gaps = 3/156 (1%)
Query: 160 LIVWGIARHYKPGVLVKSLTVGNFYAGEGIDRTGVPTKLVTMNCSLQINVHNPSTMFGIH 219
LI+WG ++ Y P V VK + V + G D +GVPT ++++N +++I NPST F +H
Sbjct: 131 LILWGASKSYPPKVTVKGMLVRDLNLQAGNDLSGVPTDMLSLNSTVRIYYRNPSTFFAVH 190
Query: 220 VSSTSIQILFSQIAIANGQLEKFYQPRSSHHVASAIVHGEKIPLYGAGETFALSNAGGAV 279
V+++ + + +S + +++G++ KF R+ +V G +IPLYG G +F L ++
Sbjct: 191 VTASPLLLHYSNLLLSSGEMNKFTVGRNGETNVVTVVQGHQIPLYG-GVSFHLDTL--SL 247
Query: 280 PLTLDLVVRARGYVIGKLVRVTHTKRVKCPVVIDSG 315
PL L +V+ ++ Y++G+LV R+ C +D+
Sbjct: 248 PLNLTIVLHSKAYILGRLVTSKFYTRIICSFTLDAN 283
>AT3G08490.1 | chr3:2574105-2575125 REVERSE LENGTH=272
Length = 271
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 7/175 (4%)
Query: 158 VCLIVWGIARHY-KPGVLVKSLTVGNFYAGEGIDRTGVPTKLVTMNCSLQINVHNPSTMF 216
V L+V+ IA P + + F EG+D GV TK +T NCS ++ + N S +F
Sbjct: 95 VALLVFYIATQPPHPNISFRIGRFNQFMLEEGVDSHGVSTKFLTFNCSTKLIIDNKSNVF 154
Query: 217 GIHVSSTSIQILFSQIAIANGQLEKFYQPRSSHHVASAIVHGEKIPLYGAG---ETFALS 273
G+H+ SI+ F + A Q K Y + +YGAG LS
Sbjct: 155 GLHIHPPSIKFFFGPLNFAKAQGPKLYGLSHESTTFQLYIATTNRAMYGAGTEMNDMLLS 214
Query: 274 NAGGAVPLTLDLVVRARGYVIGKLVRVTHTKRVKCPVVI-DSGSSKPIRFIQSAC 327
AG +PL L + + V+ ++ + +V+C +++ D + I+ C
Sbjct: 215 RAG--LPLILRTSIISDYRVVWNIINPKYHHKVECLLLLADKERHSHVTMIREKC 267
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,010,045
Number of extensions: 167102
Number of successful extensions: 381
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 9
Length of query: 330
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,392,385
Effective search space: 1938640935
Effective search space used: 1938640935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)