BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0191300 Os01g0191300|AK061716
(433 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0191300 No apical meristem (NAM) protein domain contai... 751 0.0
Os05g0563000 No apical meristem (NAM) protein domain contai... 275 6e-74
Os02g0594800 No apical meristem (NAM) protein domain contai... 196 2e-50
Os06g0560300 No apical meristem (NAM) protein domain contai... 135 7e-32
Os04g0477300 No apical meristem (NAM) protein domain contai... 130 2e-30
Os05g0194500 No apical meristem (NAM) protein domain contai... 124 1e-28
Os01g0672100 No apical meristem (NAM) protein domain contai... 114 2e-25
Os03g0624600 No apical meristem (NAM) protein domain contai... 68 2e-11
>Os01g0191300 No apical meristem (NAM) protein domain containing protein
Length = 433
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/433 (84%), Positives = 368/433 (84%)
Query: 1 MNRGHISSSELIDAKLEERRISTAKHCPSCGNKLDCKPDWVGLPAGVKFDPTDQELIEHL 60
MNRGHISSSELIDAKLEERRISTAKHCPSCGNKLDCKPDWVGLPAGVKFDPTDQELIEHL
Sbjct: 1 MNRGHISSSELIDAKLEERRISTAKHCPSCGNKLDCKPDWVGLPAGVKFDPTDQELIEHL 60
Query: 61 EAKVREEGSRSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSKHFFHRPSKAYTTGT 120
EAKVREEGSRSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSKHFFHRPSKAYTTGT
Sbjct: 61 EAKVREEGSRSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSKHFFHRPSKAYTTGT 120
Query: 121 RKRRKIQTECDVQKGETRWHKTGKTRPVMVSGRQKGCKKILVLYTNFGKHRKPEKTNWVM 180
RKRRKIQTECDVQKGETRWHKTGKTRPVMVSGRQKGCKKILVLYTNFGKHRKPEKTNWVM
Sbjct: 121 RKRRKIQTECDVQKGETRWHKTGKTRPVMVSGRQKGCKKILVLYTNFGKHRKPEKTNWVM 180
Query: 181 HQYHXXXXXXXXXXXXVVCKIFYQTQPRQCSWXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
HQYH VVCKIFYQTQPRQCSW
Sbjct: 181 HQYHLGDLEEEKEGELVVCKIFYQTQPRQCSWSSDRGGGAAATASAVTTAAVQQDQQRRR 240
Query: 241 XXXXXXXXXXXXHEVSATSYSTAGYAVAAAVEMQHLKHAADHFSFAPFRKSFEEVGISGD 300
HEVSATSYSTAGYAVAAAVEMQHLKHAADHFSFAPFRKSFEEVGISGD
Sbjct: 241 DSGSGSCSSTRDHEVSATSYSTAGYAVAAAVEMQHLKHAADHFSFAPFRKSFEEVGISGD 300
Query: 301 QVHSNQLGRSEQQHAGQEQQPHRXXXXXXXXXXXXXFLISRPTNPVSNIVPPAMQHASVV 360
QVHSNQLGRSEQQHAGQEQQPHR FLISRPTNPVSNIVPPAMQHASVV
Sbjct: 301 QVHSNQLGRSEQQHAGQEQQPHRPLLATTTAVPATAFLISRPTNPVSNIVPPAMQHASVV 360
Query: 361 LDHDQFHVPAILLHHDKFQQQQQKLDRRSAGLEELIMGCTSSSTKGEASIPHSQETEWPY 420
LDHDQFHVPAILLHHDKFQQQQQKLDRRSAGLEELIMGCTSSSTKGEASIPHSQETEWPY
Sbjct: 361 LDHDQFHVPAILLHHDKFQQQQQKLDRRSAGLEELIMGCTSSSTKGEASIPHSQETEWPY 420
Query: 421 QPYWTPDNQDHHG 433
QPYWTPDNQDHHG
Sbjct: 421 QPYWTPDNQDHHG 433
>Os05g0563000 No apical meristem (NAM) protein domain containing protein
Length = 314
Score = 275 bits (702), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 130/193 (67%), Positives = 151/193 (78%), Gaps = 7/193 (3%)
Query: 24 AKHCPSCGNKLDCKP------DWVGLPAGVKFDPTDQELIEHLEAKVREEGSRSHPLIDE 77
K CPSCG++ + D GLPAGVKFDPTDQEL+EHLE K R + + HPL+DE
Sbjct: 40 VKMCPSCGHRARYEQETTTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDSRKLHPLVDE 99
Query: 78 FIPTIEGEDGICYTHPEKLPGVTRDGLSKHFFHRPSKAYTTGTRKRRKIQTECDVQKGET 137
FIPTIEGE+GICYTHPE+LPGV++DGL +HFFHRPSKAYTTGTRKRRK+ ++ +V GET
Sbjct: 100 FIPTIEGENGICYTHPERLPGVSKDGLVRHFFHRPSKAYTTGTRKRRKVHSD-EVDGGET 158
Query: 138 RWHKTGKTRPVMVSGRQKGCKKILVLYTNFGKHRKPEKTNWVMHQYHXXXXXXXXXXXXV 197
RWHKTGKTRPVM +GR +G KKILVLYTN+GK RKPEKTNWVMHQYH V
Sbjct: 159 RWHKTGKTRPVMANGRPRGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEERDGELV 218
Query: 198 VCKIFYQTQPRQC 210
V K+F+QTQPRQC
Sbjct: 219 VSKVFFQTQPRQC 231
>Os02g0594800 No apical meristem (NAM) protein domain containing protein
Length = 393
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/188 (52%), Positives = 122/188 (64%), Gaps = 6/188 (3%)
Query: 27 CPSCGNKLD---CKPDWVGLPAGVKFDPTDQELIEHLEAKVREEGSRSHPLIDEFIPTIE 83
CP+C + +D W GLPAGVKFDP+D EL+EHLE K+ GS+ H IDEFIPTI+
Sbjct: 38 CPNCKHVIDNSDVAIQWPGLPAGVKFDPSDLELLEHLEQKIGLGGSKPHTFIDEFIPTID 97
Query: 84 GEDGICYTHPEKLPGVTRDGLSKHFFHRPSKAYTTGTRKRRKIQTECD--VQKGETRWHK 141
++GICY+HPE LPG+ +DG S HFFHR S AY G RKRRKI + CD V RWHK
Sbjct: 98 NDEGICYSHPENLPGMKKDGTSGHFFHRVSNAYGCGQRKRRKI-SNCDHVVSVEHVRWHK 156
Query: 142 TGKTRPVMVSGRQKGCKKILVLYTNFGKHRKPEKTNWVMHQYHXXXXXXXXXXXXVVCKI 201
TGK++ ++ G KG KKI+VLY + + KP+K NWVMHQYH VV KI
Sbjct: 157 TGKSKAIVEKGVTKGWKKIMVLYKSSQRGAKPDKANWVMHQYHLGAEEDEKDGELVVSKI 216
Query: 202 FYQTQPRQ 209
YQ +Q
Sbjct: 217 SYQLHGKQ 224
>Os06g0560300 No apical meristem (NAM) protein domain containing protein
Length = 110
Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 68/91 (74%), Positives = 76/91 (83%), Gaps = 3/91 (3%)
Query: 11 LIDAKLEERR--ISTAKHCPSCGNKLDCKPDWVGLPAGVKFDPTDQELIEHLEAKVREEG 68
LI +++EE R +S CP CG+K+D K DWVGLPAGVKFDPTDQELIEHLEAKVR G
Sbjct: 20 LIGSRIEEHRKYMSEESCCPRCGHKIDRKLDWVGLPAGVKFDPTDQELIEHLEAKVRPGG 79
Query: 69 -SRSHPLIDEFIPTIEGEDGICYTHPEKLPG 98
+ +HPLIDEFIPTIEGEDGICYTHPEKLPG
Sbjct: 80 EAAAHPLIDEFIPTIEGEDGICYTHPEKLPG 110
>Os04g0477300 No apical meristem (NAM) protein domain containing protein
Length = 176
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 87/149 (58%), Gaps = 4/149 (2%)
Query: 7 SSSELIDAKLEERRISTAKHCPSCG---NKLDCKPDWVGLPAGVKFDPTDQELIEHLEAK 63
++++L+ KL E + CP+C + D W P GVKFDP+D E++EHLE K
Sbjct: 26 NATQLLSCKLGELVPEAWRECPNCKCHIDNSDVTLQWPEFPDGVKFDPSDLEVLEHLERK 85
Query: 64 VREEGSRSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSKHFFHRPSKAYTTGTRKR 123
+ LID FIPT+E +GICYTHPE LPG+ DG S HFFHR S AY +G RKR
Sbjct: 86 INLGNPGPQGLIDHFIPTLEKVEGICYTHPENLPGIKLDGTSSHFFHRISNAYGSGQRKR 145
Query: 124 RKIQTECDVQKGET-RWHKTGKTRPVMVS 151
RKI E RWHKTGK+ ++
Sbjct: 146 RKISHTGHAASDENIRWHKTGKSNRFTIT 174
>Os05g0194500 No apical meristem (NAM) protein domain containing protein
Length = 104
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/80 (73%), Positives = 70/80 (87%), Gaps = 2/80 (2%)
Query: 22 STAKHCPSCGNKLDC-KP-DWVGLPAGVKFDPTDQELIEHLEAKVREEGSRSHPLIDEFI 79
++++ CPSCG+ DC KP D VG+PAGV+FDPTDQELIEHLEAKV++ GS SHPLIDEFI
Sbjct: 25 ASSRRCPSCGHDPDCNKPFDMVGMPAGVRFDPTDQELIEHLEAKVKDGGSTSHPLIDEFI 84
Query: 80 PTIEGEDGICYTHPEKLPGV 99
TI+GEDGICYTHPE LPG+
Sbjct: 85 HTIQGEDGICYTHPENLPGL 104
>Os01g0672100 No apical meristem (NAM) protein domain containing protein
Length = 252
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 66/91 (72%), Gaps = 9/91 (9%)
Query: 21 ISTAKHCPSCGNKLDCKP--------DWVGLPAGVKFDPTDQELIEHLEAKVREEGSRSH 72
++ K CPSCG++ + D GLPAGVKFDPTDQEL+EHLE K R + + H
Sbjct: 39 VNLIKTCPSCGHRAQYEQAAAAATIQDLPGLPAGVKFDPTDQELLEHLEGKARPDARKLH 98
Query: 73 PLIDEFIPTIEGEDGICYTHPEKLPGVTRDG 103
PLIDEFIPTIEGE+GICYTHPE+LPG TR G
Sbjct: 99 PLIDEFIPTIEGENGICYTHPERLPG-TRQG 128
>Os03g0624600 No apical meristem (NAM) protein domain containing protein
Length = 323
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 72/169 (42%), Gaps = 23/169 (13%)
Query: 42 GLPAGVKFDPTDQELIE-HLEAKVREEGSRSHPLIDEFIPTIEGEDGICYTHPEKLPGVT 100
GLP G +F PTD+EL+ +L KV + G + + D + E P LP
Sbjct: 4 GLPPGFRFHPTDEELVTYYLARKVSDFGFATRAIADVDLNKCE---------PWDLPSKA 54
Query: 101 RDGLSK-HFFHRPSKAYTTGTRKRRKIQTECDVQKGETRWHKTGKTRPVMVSGRQKGCKK 159
G + +FF + Y TG R R + W TGK + + G G KK
Sbjct: 55 SMGEKEWYFFSMRDRKYPTGIRTNRATDS--------GYWKTTGKDKEIFHGGALAGMKK 106
Query: 160 ILVLYTNFGKHRKPEKTNWVMHQYHXXXX--XXXXXXXXVVCKIFYQTQ 206
LV Y G+ K KT+WVMH+Y VVC++F + Q
Sbjct: 107 TLVFYR--GRAPKGAKTSWVMHEYRLQSKFPYKPAKDEWVVCRVFKKLQ 153
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,736,412
Number of extensions: 542192
Number of successful extensions: 1577
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1603
Number of HSP's successfully gapped: 9
Length of query: 433
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 329
Effective length of database: 11,605,545
Effective search space: 3818224305
Effective search space used: 3818224305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)