BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0170600 Os01g0170600|AK067202
(160 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0170600 Universal stress protein (Usp) family protein 329 4e-91
Os05g0157200 Universal stress protein (Usp) family protein 196 6e-51
Os02g0773200 Universal stress protein (Usp) family protein 164 2e-41
Os01g0849600 Similar to ENOD18 protein (Fragment) 151 2e-37
Os05g0453700 Similar to ENOD18 protein (Fragment) 140 3e-34
Os02g0760500 Similar to ER6 protein (Fragment) 75 3e-14
Os10g0437500 Universal stress protein (Usp) family protein 64 7e-11
>Os01g0170600 Universal stress protein (Usp) family protein
Length = 160
Score = 329 bits (844), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MGGRKIGVAVDFSSCSKAALRWASTNLTRSGDQLVLIHVNSSYHNEQGAVQLWEQSGSPL 60
MGGRKIGVAVDFSSCSKAALRWASTNLTRSGDQLVLIHVNSSYHNEQGAVQLWEQSGSPL
Sbjct: 1 MGGRKIGVAVDFSSCSKAALRWASTNLTRSGDQLVLIHVNSSYHNEQGAVQLWEQSGSPL 60
Query: 61 IPLAEFSDPHVAKTYAVSPDKETLEILNQMSNQRGVEVLAKILYGDPAKKLYEAVDLVPL 120
IPLAEFSDPHVAKTYAVSPDKETLEILNQMSNQRGVEVLAKILYGDPAKKLYEAVDLVPL
Sbjct: 61 IPLAEFSDPHVAKTYAVSPDKETLEILNQMSNQRGVEVLAKILYGDPAKKLYEAVDLVPL 120
Query: 121 NCLVVGNRGLSTLKRALMGSVSSYIVNNATCPVTVVKENI 160
NCLVVGNRGLSTLKRALMGSVSSYIVNNATCPVTVVKENI
Sbjct: 121 NCLVVGNRGLSTLKRALMGSVSSYIVNNATCPVTVVKENI 160
>Os05g0157200 Universal stress protein (Usp) family protein
Length = 167
Score = 196 bits (498), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 89/154 (57%), Positives = 119/154 (77%)
Query: 4 RKIGVAVDFSSCSKAALRWASTNLTRSGDQLVLIHVNSSYHNEQGAVQLWEQSGSPLIPL 63
R +G AVDFS S+AALRWA+ NL R+GD L+L+HV EQG LWE +GSPLIPL
Sbjct: 10 RWVGAAVDFSEGSRAALRWAADNLLRAGDHLILLHVLKDPDYEQGETLLWEATGSPLIPL 69
Query: 64 AEFSDPHVAKTYAVSPDKETLEILNQMSNQRGVEVLAKILYGDPAKKLYEAVDLVPLNCL 123
++FS+P +AK Y PD ETL++LN ++ Q+ V V+ K+L+GDP +KL +A++ +P++CL
Sbjct: 70 SDFSEPTIAKKYGAKPDAETLDMLNTVARQKEVVVVFKVLWGDPREKLCQAINEIPMSCL 129
Query: 124 VVGNRGLSTLKRALMGSVSSYIVNNATCPVTVVK 157
V+G+RGL LKR L+GSVS Y+VNNATCPVTVVK
Sbjct: 130 VIGSRGLGKLKRVLLGSVSDYVVNNATCPVTVVK 163
>Os02g0773200 Universal stress protein (Usp) family protein
Length = 165
Score = 164 bits (415), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 111/158 (70%), Gaps = 9/158 (5%)
Query: 4 RKIGVAVDFSSCSKAALRWASTNLTRSGDQLVLIHV----NSSYHNEQGAVQLWEQSGSP 59
R IG+ +D+S SKAA +WA NL ++GD+++L+HV + H E LW+ +GSP
Sbjct: 6 RTIGLGMDYSPSSKAAAKWAVDNLVKAGDRIILVHVLPKGADASHKE-----LWKSTGSP 60
Query: 60 LIPLAEFSDPHVAKTYAVSPDKETLEILNQMSNQRGVEVLAKILYGDPAKKLYEAVDLVP 119
LIPL EF + +V Y ++PDKE LEIL S + VEVLAK+ +GD +KL EAVD +
Sbjct: 61 LIPLLEFMEMNVQARYGINPDKEVLEILQAESKSKQVEVLAKVYWGDAREKLCEAVDDLK 120
Query: 120 LNCLVVGNRGLSTLKRALMGSVSSYIVNNATCPVTVVK 157
+N V+G RGL LKRAL+GSVS+Y+VNNATCPVTVV+
Sbjct: 121 VNTFVLGCRGLGPLKRALLGSVSNYVVNNATCPVTVVR 158
>Os01g0849600 Similar to ENOD18 protein (Fragment)
Length = 162
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 109/156 (69%), Gaps = 1/156 (0%)
Query: 2 GGRKIGVAVDFSSCSKAALRWASTNLTRSGDQLVLIHVNSSYHNEQGAVQLWEQSGSPLI 61
G R+IGVA+DFS SK AL+WA+ NL R GD LVL+H+ +E V LW +GSPLI
Sbjct: 6 GERRIGVAMDFSPSSKKALQWAADNLLRKGDTLVLLHIRHHGRDEAKNV-LWSHTGSPLI 64
Query: 62 PLAEFSDPHVAKTYAVSPDKETLEILNQMSNQRGVEVLAKILYGDPAKKLYEAVDLVPLN 121
PL E + V + Y + D+E ++LN +S ++ + V+ K+ +G+P +K+ EAV + L
Sbjct: 65 PLEELMETAVRQRYDIPSDEEVFDMLNAVSREKELSVVLKMYWGEPREKVCEAVGELNLE 124
Query: 122 CLVVGNRGLSTLKRALMGSVSSYIVNNATCPVTVVK 157
LV+G+RGL ++R L+GSV++Y+++NA+CPVTVVK
Sbjct: 125 SLVMGSRGLGQIQRILLGSVTNYVLSNASCPVTVVK 160
>Os05g0453700 Similar to ENOD18 protein (Fragment)
Length = 165
Score = 140 bits (354), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/154 (48%), Positives = 109/154 (70%), Gaps = 1/154 (0%)
Query: 4 RKIGVAVDFSSCSKAALRWASTNLTRSGDQLVLIHVNSSYHNEQGAVQLWEQSGSPLIPL 63
R+IGVA+D+S+ SK AL WA NL R GD LV++HV E+ LW +SGSPLIPL
Sbjct: 11 RRIGVAMDYSASSKRALDWAIANLLRRGDHLVVLHVLHH-GGEEAKHALWGKSGSPLIPL 69
Query: 64 AEFSDPHVAKTYAVSPDKETLEILNQMSNQRGVEVLAKILYGDPAKKLYEAVDLVPLNCL 123
+EF DP + Y V D E L++L+ + Q + V+AK+ +GD +KL +AV+ ++ L
Sbjct: 70 SEFRDPTAMQQYGVHCDAEVLDMLDTAARQLELTVVAKLYWGDAREKLCDAVEEQKIDTL 129
Query: 124 VVGNRGLSTLKRALMGSVSSYIVNNATCPVTVVK 157
V+G+RGL +++R L+GSV++Y+++NA+CPVTVVK
Sbjct: 130 VMGSRGLGSIQRILLGSVTNYVLSNASCPVTVVK 163
>Os02g0760500 Similar to ER6 protein (Fragment)
Length = 162
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 75/154 (48%), Gaps = 8/154 (5%)
Query: 8 VAVDFSSCSKAALRWASTNLT-RSGDQLVLIHVNSSYHNEQGAVQLWEQSGSPLIPLAEF 66
VAVD S S ALRWA NL R LV++HV G G P +E
Sbjct: 11 VAVDGSEESMNALRWALDNLRLRPDGALVVLHVQPPPSIAAGLNPGPIPFGGP----SEV 66
Query: 67 SDPHVAKTYAVSPDKETLEILN---QMSNQRGVEVLAKILYGDPAKKLYEAVDLVPLNCL 123
P + + T IL+ ++ +++ VEV ++ GDP +K+ E + + L
Sbjct: 67 EVPAFTQAIEAHQRRITQAILDHALKICSEKNVEVKTDVVVGDPKEKICEVTANLKADLL 126
Query: 124 VVGNRGLSTLKRALMGSVSSYIVNNATCPVTVVK 157
V+G R LKR +GSVS+Y +NN CPV V+K
Sbjct: 127 VMGCRAFGPLKRMFLGSVSNYCINNVVCPVVVIK 160
>Os10g0437500 Universal stress protein (Usp) family protein
Length = 181
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 75/170 (44%), Gaps = 24/170 (14%)
Query: 5 KIGVAVDFSSCSKAALRWASTNL----------------TRSGDQLVLIHVNSSYHNEQG 48
K+ VAVD S S AL W +L R +LVL+H H+
Sbjct: 2 KVLVAVDDSRGSHRALSWVLDHLFFPAAATGDGGEEEQVPRPAPELVLVHAIEPLHH--- 58
Query: 49 AVQLWEQSGSPLIPLAEFSDPHVAKTYAVSPDKETLEILNQM-SNQRGVEVLAKILYGDP 107
V GS + A + A A + + L + ++ +RGV + G+P
Sbjct: 59 -VMFPVGPGSAVYGAASMME---AVRAAQAENARNLLVRARLICERRGVAAATVAVEGEP 114
Query: 108 AKKLYEAVDLVPLNCLVVGNRGLSTLKRALMGSVSSYIVNNATCPVTVVK 157
+ L A + LVVG+RGL LKRA +GSVS Y + A+CP+ VVK
Sbjct: 115 REALCRAAEDAGAGLLVVGSRGLGALKRAFLGSVSDYCAHRASCPIMVVK 164
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,326,399
Number of extensions: 197021
Number of successful extensions: 468
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 467
Number of HSP's successfully gapped: 7
Length of query: 160
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 67
Effective length of database: 12,179,899
Effective search space: 816053233
Effective search space used: 816053233
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)