Os01g0170600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Universal stress protein (Usp) family protein.
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Os01g0170600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Universal stress protein (Usp) family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.4 | 0.424 | 10.9 | 1.29 | 1.15 | 0.724 | 0.0637 | -2.38 | 0.0316 | 15.6 | 0.36 | 4419 | -- | -- |
| 83.82 | 0.426 | 10.9 | 1.63 | 1.17 | 1.35 | -0.208 | -- | 0.0368 | 15.7 | 0.1633 | 4401 | -- | -- |
| 81.34 | 0.42 | 10.9 | 1.28 | 1.17 | 0.704 | -- | -2.34 | 0.0317 | 15.5 | 0.36 | 4390 | -- | -- |
| 83.67 | 0.426 | 10.9 | 1.58 | 1.08 | 1.32 | -- | -- | 0.0395 | 15.7 | 0.1531 | 4435 | -- | -- |
| 119.15 | 0.508 | 10.9 | 0.914 | -- | 1.31 | -- | -2.34 | -0.153 | -- | 1.07 | 4794 | -- | -- |
| 111.46 | 0.495 | 10.8 | 2.08 | 1.22 | -- | -0.189 | -- | 0.313 | 15.4 | -- | -- | -- | -- |
| 111.57 | 0.495 | 10.8 | 2.08 | 1.22 | -- | -- | -- | 0.311 | 15.4 | -- | -- | -- | -- |
| 100.41 | 0.467 | 10.9 | 1.59 | -- | 2.16 | -- | -- | -0.0158 | -- | 0.83 | 4802 | -- | -- |
| 116.79 | 0.503 | 10.9 | -- | 1.24 | 1.59 | -- | -- | -0.312 | 15.5 | 2.131e-05 | 47520 | -- | -- |
| 194.76 | 0.652 | 10.8 | 2.02 | -- | -- | -- | -- | 0.279 | -- | -- | -- | -- | -- |
| 225.16 | 0.702 | 10.9 | -- | 1.17 | -- | -- | -- | 0.0802 | 15.4 | -- | -- | -- | -- |
| 151.62 | 0.573 | 10.9 | -- | -- | 2.62 | -- | -- | -0.187 | -- | 0.33 | 4796 | -- | -- |
| 302.88 | 0.812 | 10.9 | -- | -- | -- | -- | -- | 0.0547 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 14 | 78.87 | temperature | 15 | 720 | > th | dose dependent | sin | 5 | NA |
| 16 | 78.90 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 73 | 81.25 | radiation | 1 | 4320 | < th | dose dependent | rect. | 15 | 5 |
| 76 | 81.25 | radiation | 1 | 4320 | < th | dose dependent | rect. | 15 | 9 |
| 94 | 81.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 9 |
| 109 | 81.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 113 | 81.66 | radiation | 1 | 4320 | < th | dose dependent | rect. | 14 | 20 |
| 131 | 81.75 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 138 | 81.79 | radiation | 1 | 4320 | < th | dose dependent | sin | 15 | NA |
| 167 | 81.95 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 175 | 82.01 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 181 | 82.04 | radiation | 1 | 4320 | < th | dose dependent | rect. | 6 | 13 |
| 184 | 82.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 16 |
| 195 | 82.06 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 200 | 82.07 | radiation | 1 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 212 | 82.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 18 |
| 216 | 82.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 16 |
| 259 | 82.18 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 262 | 82.18 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 270 | 82.21 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 312 | 82.29 | radiation | 1 | 4320 | < th | dose dependent | rect. | 8 | 23 |
| 341 | 82.38 | radiation | 1 | 4320 | < th | dose dependent | rect. | 3 | 16 |
| 357 | 82.38 | radiation | 1 | 4320 | < th | dose dependent | rect. | 23 | 22 |
| 359 | 82.39 | radiation | 1 | 4320 | < th | dose dependent | no | NA | NA |
| 407 | 82.42 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 409 | 82.43 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 430 | 82.49 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 450 | 82.54 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 496 | 82.64 | radiation | 1 | 4320 | > th | dose independent | sin | 15 | NA |
| 540 | 82.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 22 |
| 548 | 82.81 | radiation | 1 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 549 | 82.81 | radiation | 1 | 4320 | < th | dose independent | rect. | 15 | 10 |
| 551 | 82.81 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 556 | 82.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 557 | 82.82 | radiation | 1 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 562 | 82.82 | radiation | 1 | 4320 | < th | dose independent | rect. | 15 | 13 |
| 569 | 82.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 582 | 82.84 | radiation | 1 | 4320 | > th | dose independent | rect. | 7 | 12 |
| 653 | 82.96 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 671 | 83.00 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 715 | 83.05 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 747 | 83.17 | wind | 9 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 761 | 83.23 | radiation | 1 | 4320 | < th | dose independent | rect. | 7 | 12 |
| 769 | 83.23 | radiation | 1 | 4320 | < th | dose independent | rect. | 7 | 21 |
| 815 | 83.33 | radiation | 1 | 4320 | < th | dose independent | sin | 16 | NA |
| 867 | 83.46 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 902 | 83.56 | radiation | 30 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 908 | 83.58 | humidity | 60 | 43200 | < th | dose independent | rect. | 5 | 7 |
| 931 | 83.61 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 979 | 83.69 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 982 | 83.70 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 1 |