BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0170600 Os01g0170600|AK067202
(160 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G17020.1 | chr3:5802728-5804063 REVERSE LENGTH=164 190 4e-49
AT3G53990.1 | chr3:19989658-19991019 REVERSE LENGTH=161 149 6e-37
AT3G03270.1 | chr3:761383-763075 REVERSE LENGTH=202 110 4e-25
AT1G09740.1 | chr1:3154603-3155834 FORWARD LENGTH=172 72 2e-13
AT1G11360.1 | chr1:3822171-3822899 REVERSE LENGTH=243 71 3e-13
AT1G68300.1 | chr1:25598518-25599261 REVERSE LENGTH=161 69 8e-13
AT3G58450.1 | chr3:21622032-21623057 FORWARD LENGTH=205 67 5e-12
AT5G14680.1 | chr5:4731620-4733025 REVERSE LENGTH=176 58 2e-09
AT3G01520.1 | chr3:208506-209921 FORWARD LENGTH=176 55 1e-08
AT3G62550.1 | chr3:23136194-23137074 FORWARD LENGTH=163 55 1e-08
AT5G54430.1 | chr5:22097563-22099693 REVERSE LENGTH=243 49 1e-06
AT2G47710.1 | chr2:19555045-19555956 REVERSE LENGTH=163 49 1e-06
AT2G21620.2 | chr2:9248749-9249986 FORWARD LENGTH=194 48 2e-06
AT3G11930.3 | chr3:3776371-3777393 FORWARD LENGTH=227 47 3e-06
>AT3G17020.1 | chr3:5802728-5804063 REVERSE LENGTH=164
Length = 163
Score = 190 bits (482), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 116/159 (72%)
Query: 2 GGRKIGVAVDFSSCSKAALRWASTNLTRSGDQLVLIHVNSSYHNEQGAVQLWEQSGSPLI 61
GGR+IGVAVDFS CSK AL WA N+ R GD L+LI + + E+G +QLWE GSP I
Sbjct: 5 GGRRIGVAVDFSDCSKKALSWAIDNVVRDGDHLILITIAHDMNYEEGEMQLWETVGSPFI 64
Query: 62 PLAEFSDPHVAKTYAVSPDKETLEILNQMSNQRGVEVLAKILYGDPAKKLYEAVDLVPLN 121
P++EFSD V K YA+ PD ETL+I+N + ++ + V+ KI +GDP +K+ A + +PL+
Sbjct: 65 PMSEFSDAAVMKKYALKPDAETLDIVNTAARKKTITVVMKIYWGDPREKICAAAEQIPLS 124
Query: 122 CLVVGNRGLSTLKRALMGSVSSYIVNNATCPVTVVKENI 160
LV+GNRGL LKR +MGSVS+++VNN CPVTVVK +I
Sbjct: 125 SLVMGNRGLGGLKRMIMGSVSNHVVNNVACPVTVVKAHI 163
>AT3G53990.1 | chr3:19989658-19991019 REVERSE LENGTH=161
Length = 160
Score = 149 bits (376), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 105/156 (67%), Gaps = 1/156 (0%)
Query: 4 RKIGVAVDFSSCSKAALRWASTNLTRSGDQLVLIHVNSSYHNEQGAVQLWEQSGSPLIPL 63
R IG+A+DFS SK AL+WA NL GD + +IH ++ LW +SGSPLIPL
Sbjct: 5 RNIGIAMDFSESSKNALKWAIENLADKGDTIYIIH-TLPLSGDESRNSLWFKSGSPLIPL 63
Query: 64 AEFSDPHVAKTYAVSPDKETLEILNQMSNQRGVEVLAKILYGDPAKKLYEAVDLVPLNCL 123
AEF +P + + Y V D L++L+ S Q+ V V+ K+ +GD +KL +AV + L+ +
Sbjct: 64 AEFREPEIMEKYGVKTDIACLDMLDTGSRQKEVHVVTKLYWGDAREKLVDAVKDLKLDSI 123
Query: 124 VVGNRGLSTLKRALMGSVSSYIVNNATCPVTVVKEN 159
V+G+RGLS L+R +MGSVSS+++ +A CPVTVVK+N
Sbjct: 124 VMGSRGLSALQRIIMGSVSSFVIQHAPCPVTVVKDN 159
>AT3G03270.1 | chr3:761383-763075 REVERSE LENGTH=202
Length = 201
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 93/132 (70%), Gaps = 1/132 (0%)
Query: 4 RKIGVAVDFSSCSKAALRWASTNLTRSGDQLVLIHVNSSYHNEQGAVQLWEQSGSPLIPL 63
R +GV +D+S SK ALRWA+ NL GD ++LIHV + + L+E++GSPLIPL
Sbjct: 5 RTVGVGMDYSPTSKLALRWAAENLLEDGDTVILIHVQPQNADHTRKI-LFEETGSPLIPL 63
Query: 64 AEFSDPHVAKTYAVSPDKETLEILNQMSNQRGVEVLAKILYGDPAKKLYEAVDLVPLNCL 123
EF + +++K Y ++ D E L++L+ +S + V+V+AK+ +GDP +KL +AV+ + L+ +
Sbjct: 64 EEFREVNLSKQYGLAYDPEVLDVLDTLSRAKKVKVVAKVYWGDPREKLCDAVENLKLDSI 123
Query: 124 VVGNRGLSTLKR 135
V+G+RGL +LKR
Sbjct: 124 VLGSRGLGSLKR 135
>AT1G09740.1 | chr1:3154603-3155834 FORWARD LENGTH=172
Length = 171
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 82/161 (50%), Gaps = 19/161 (11%)
Query: 8 VAVDFSSCSKAALRWASTNL----TRSGDQLVLIHVNSSYHNEQGAVQLWEQSGSP-LIP 62
VAVD S S ALRWA NL + S V++HV S G SP IP
Sbjct: 12 VAVDGSEVSMEALRWALDNLKLSSSSSDSSFVVLHVQPSPSVAAGV--------SPGTIP 63
Query: 63 LAEFSDPHV-AKTYAVSPDKE-----TLEILNQMSNQRGVEVLAKILYGDPAKKLYEAVD 116
S V A T A+ ++ LE +Q+ ++ V V +++ GDP K+ EAV+
Sbjct: 64 FGGPSGLEVPAFTAAIEQHQKRITDTILEHASQICAEKSVNVKTQVVIGDPKYKICEAVE 123
Query: 117 LVPLNCLVVGNRGLSTLKRALMGSVSSYIVNNATCPVTVVK 157
+ + LV+G+R +KR +GSVS+Y N+A CPV ++K
Sbjct: 124 NLHADLLVMGSRAYGRIKRMFLGSVSNYCTNHAHCPVVIIK 164
>AT1G11360.1 | chr1:3822171-3822899 REVERSE LENGTH=243
Length = 242
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 10/160 (6%)
Query: 4 RKIGVAVDFSSCSKAALRWASTNLTRSGDQLVLIHVNSS---YHNEQGAVQLWEQSGSPL 60
RKIG+AVD S S A++WA N RSGD +VL+HV + Y + GA+ L Q
Sbjct: 38 RKIGIAVDLSDESAYAVQWAVQNYLRSGDAVVLLHVQPTSVLYGADWGAMDLSPQ----W 93
Query: 61 IPLAEFSDPHVAKTYAVSPDKETLEILNQMSNQRGVEVLAKILYGDPAKKLYEAVDLVPL 120
P E S + + + +K+ ++ + + + D ++L V+ + L
Sbjct: 94 DPNNEESQRKLEDDFDIVTNKKASDVAQPLVEADIPFKIHIVKDHDMKERLCLEVERLGL 153
Query: 121 NCLVVGNRGLSTLKRA---LMGSVSSYIVNNATCPVTVVK 157
+ L++G+RG KR+ +GSVS Y V++ CPV VV+
Sbjct: 154 STLIMGSRGFGATKRSSKGRLGSVSDYSVHHCACPVVVVR 193
>AT1G68300.1 | chr1:25598518-25599261 REVERSE LENGTH=161
Length = 160
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 6/154 (3%)
Query: 4 RKIGVAVDFSSCSKAALRWASTNLTRSGDQLVLIHVNSSYHNEQGAVQLWEQSGSPLIPL 63
+++ VA+D S CSK AL+W L S +I + H + V +P+ +
Sbjct: 10 KQVMVAIDESECSKRALQWTLVYLKDSLADSDIILFTAQPHLDLSCVYASSYGAAPIELI 69
Query: 64 AEFSDPHVAKTYAVSPDKETLEILNQMSNQRGVEVLAKILYGDPAKKLYEAVDLVPLNCL 123
+ H K ++ E +I + GV + +G+P + + EA + + ++ L
Sbjct: 70 NSLQESH--KNAGLNRLDEGTKICAET----GVTPRKVLEFGNPKEAICEAAEKLGVDML 123
Query: 124 VVGNRGLSTLKRALMGSVSSYIVNNATCPVTVVK 157
VVG+ G L+R +GSVS+Y VNNA CPV VV+
Sbjct: 124 VVGSHGKGALQRTFLGSVSNYCVNNAKCPVLVVR 157
>AT3G58450.1 | chr3:21622032-21623057 FORWARD LENGTH=205
Length = 204
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 21/163 (12%)
Query: 8 VAVDFSSCSKAALRWASTNLT----------RSGDQLVLIHVNSSYHNEQGAVQLWEQSG 57
VA+D S S AL WA +L + G L L+HV+ +Y +Q SG
Sbjct: 34 VAIDESKNSFDALEWAVDHLRVVISAEPETGQEGGLLTLLHVHPTY------LQYIYPSG 87
Query: 58 SPLIPLAEFSDPHVAKTYAVSPDKETLEILN---QMSNQRGVEVLAKILYGDPAKKLYEA 114
A ++ V + + ++ T + ++ + V+ IL GDP + + +A
Sbjct: 88 G--TASAVYATDSVPEPMRKAREESTTNLFTRALEICRGKMVKTETMILEGDPKEMICQA 145
Query: 115 VDLVPLNCLVVGNRGLSTLKRALMGSVSSYIVNNATCPVTVVK 157
V+ ++ LVVG+RGL +KRA +GSVS Y +A CP+ +V+
Sbjct: 146 VEQTHVDLLVVGSRGLGMIKRAFLGSVSDYCAQHAKCPILIVR 188
>AT5G14680.1 | chr5:4731620-4733025 REVERSE LENGTH=176
Length = 175
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 16 SKAALRWASTNLTRS---GDQLVLIHVNSSYHNEQGAVQLWEQSGSPLIPLAEFSDPHVA 72
SK A W + RS G +L+L+HV +E G + SP + + + A
Sbjct: 27 SKKAFEWTLKKIVRSNTSGFKLLLLHVQ--VQDEDGFDDMDSIYASP-DDFRQMRERNKA 83
Query: 73 KTYAVSPDKETLEILNQMSNQRGVEVLAKILYGDPAKKLYEAVDLVPLNCLVVGNRGLST 132
K + LE + + GV A I GDP + + V V + LVVG+RGL
Sbjct: 84 KGLHL------LEFFVKKCHDIGVGCEAWIRKGDPTELICHEVRRVRPDFLVVGSRGLGP 137
Query: 133 LKRALMGSVSSYIVNNATCPVTVVK 157
++ +G+VS + V +A CPV +K
Sbjct: 138 FQKVFVGTVSEFCVKHAECPVITIK 162
>AT3G01520.1 | chr3:208506-209921 FORWARD LENGTH=176
Length = 175
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 13/149 (8%)
Query: 14 SCSKAALRWASTNLTRSGD---QLVLIHVNSSYHNEQGAVQLWEQSGSPLIPLAEFSDPH 70
SC K A W + RS +++L+HV +E G + SP +F D
Sbjct: 26 SC-KRAFEWTLEKIVRSNTSDFKILLLHVQVV--DEDGFDDVDSIYASP----EDFRD-- 76
Query: 71 VAKTYAVSPDKETLEILNQMSNQRGVEVLAKILYGDPAKKLYEAVDLVPLNCLVVGNRGL 130
+ + LE ++ GV A I GDP + + V V + LVVG+RGL
Sbjct: 77 -MRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGL 135
Query: 131 STLKRALMGSVSSYIVNNATCPVTVVKEN 159
++ +G+VS++ V +A CPV +K N
Sbjct: 136 GRFQKVFVGTVSAFCVKHAECPVMTIKRN 164
>AT3G62550.1 | chr3:23136194-23137074 FORWARD LENGTH=163
Length = 162
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 22/165 (13%)
Query: 4 RKIGVAVDFSSCSKAALRWASTNLTRSG--DQLVLIHVNSS---YHNEQGAVQLWEQSGS 58
RKI VAVD S S AL W+ NL G + L+L++V Y + A + +G
Sbjct: 7 RKIVVAVDESEESMEALSWSLDNLFPYGSNNTLILLYVKPPLPVYSSLDAAGFIV--TGD 64
Query: 59 PLIPLAEFS----DPHVAKTYAVSPDKETLEILNQMSNQRGVEVLAKILYGDPAKKLYEA 114
P+ L ++ + +A++ V D E+ + + ++ GD + + A
Sbjct: 65 PVAALKKYEYELVESVMARSRTVYQDYES-----------DINIERRVGRGDAKEVICNA 113
Query: 115 VDLVPLNCLVVGNRGLSTLKRALMGSVSSYIVNNATCPVTVVKEN 159
V + ++ LV+G KRAL+GSVS Y CPV +VK+
Sbjct: 114 VQKLRVDMLVMGTHDYGFFKRALLGSVSEYCAKRVKCPVVIVKKQ 158
>AT5G54430.1 | chr5:22097563-22099693 REVERSE LENGTH=243
Length = 242
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 32/158 (20%)
Query: 4 RKIGVAVDFSSCSKAALRWASTNLTRSGDQLVLIHVNSSYHNEQGAVQLWEQSGSPLIPL 63
RKIGVAVD S S A+RWA + R GD +VL+HV+ + L+ PL
Sbjct: 48 RKIGVAVDLSEESSFAVRWAVDHYIRPGDAVVLLHVSPTS-------VLFGADWGPLPLK 100
Query: 64 AEFSDPHVAKTYAVSPDKETLEILNQMSNQRGVEVLAKIL--YGDPAK-----------K 110
+ DP+ P +E + V LAK L G P K +
Sbjct: 101 TQIEDPNAQP----QPSQEDFDAFTSTK----VADLAKPLKELGFPYKIHIVKDHDMRER 152
Query: 111 LYEAVDLVPLNCLVVGNRGLSTLKR----ALMGSVSSY 144
L ++ + L+ +++G+RG K+ +GSVS Y
Sbjct: 153 LCLEIERLGLSAVIMGSRGFGAEKKRGSDGKLGSVSDY 190
>AT2G47710.1 | chr2:19555045-19555956 REVERSE LENGTH=163
Length = 162
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 17/157 (10%)
Query: 8 VAVDFSSCSKAALRWASTNLTRSGD-----QLVLIHVNSSYHNEQGAVQLWEQSGSPLIP 62
V VD S S AL W +L ++H N AV L + ++P
Sbjct: 12 VGVDDSEQSTYALEWTLDRFFAPYAPNYPFKLFIVHAKP---NAVSAVGLAGPGTAEVVP 68
Query: 63 LAEFSDPHVAKTYAVSPDKETLEILNQMSNQRGVE-VLAKILYGDPAKKLYEAVDLVPLN 121
+ H A + +E + R V + ++ GD L E VD +
Sbjct: 69 YVDADLKHTAA--------KVVEKAKAICQSRSVHGAVIEVFEGDARNILCEVVDKHHAS 120
Query: 122 CLVVGNRGLSTLKRALMGSVSSYIVNNATCPVTVVKE 158
LVVG+ G +KRA++GS S Y ++A C V +VK+
Sbjct: 121 ILVVGSHGYGAIKRAVLGSTSDYCAHHAHCSVMIVKK 157
>AT2G21620.2 | chr2:9248749-9249986 FORWARD LENGTH=194
Length = 193
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 26/152 (17%)
Query: 8 VAVDFSSCSKAALRWASTNLTRSGDQLVLIHVNSSYHNEQGAVQ--LWEQSGSPLIPLAE 65
VAVD SK A WA + R D L L+H SS + Q ++E S + + LA
Sbjct: 44 VAVDHGPNSKHAFDWALVHFCRLADTLHLVHAVSSSFSLQCVKNDVVYETSQALMEKLA- 102
Query: 66 FSDPHVAKTYAVSPDKETLEILNQMSNQRGVEVLAKILYGDPAKKLYEAVDLVPLNCLVV 125
+ Y V+ V+ +A+++ GD K + + + V ++V
Sbjct: 103 ------VEAYQVA----------------MVKSVARVVEGDAGKVICKEAEKVKPAAVIV 140
Query: 126 GNRGLSTLKRALMGSVSSYIVNNA-TCPVTVV 156
G RG S ++ L GSVS Y +N + PV +V
Sbjct: 141 GTRGRSLVRSVLQGSVSEYCFHNCKSAPVIIV 172
>AT3G11930.3 | chr3:3776371-3777393 FORWARD LENGTH=227
Length = 226
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 81/193 (41%), Gaps = 45/193 (23%)
Query: 4 RKIGVAVDFSSCSKAALRWASTNLTR----------SGDQLVLIHVNSSYHNEQGAVQLW 53
+++ VA+D S S AL+W + + L +IHV S +++
Sbjct: 33 KRMVVAIDESDSSFYALQWVIDHFSNLLLTTAAAEAESGMLTVIHVQSPFNH------FA 86
Query: 54 EQSGSPLIPLAEFSDPHVAKTYAVSPDKETLEILN---QMSNQRGVEVLAKILYGDPAKK 110
P A ++ + ++ + + + +L+ QM + + +L G+ +
Sbjct: 87 AFPAGPGGATAVYASSSMIESVKKAQQETSAALLSRALQMCRAKQIRTETLVLEGEAKEM 146
Query: 111 LYEAVDLVPLNCLVVGNRGLSTLK--------------------------RALMGSVSSY 144
+ EAV+ + ++ LVVG+RGL +K RA +GSVS Y
Sbjct: 147 ICEAVEKMHVDLLVVGSRGLGKIKRYCIINNFFLYINLSAYYFVCFVRFGRAFLGSVSDY 206
Query: 145 IVNNATCPVTVVK 157
++A CP+ +VK
Sbjct: 207 CAHHANCPILIVK 219
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,455,875
Number of extensions: 131149
Number of successful extensions: 406
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 15
Length of query: 160
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 69
Effective length of database: 8,611,713
Effective search space: 594208197
Effective search space used: 594208197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 107 (45.8 bits)