BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0150800 Os01g0150800|AK072612
(225 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0150800 Protein tyrosine phosphatase-like protein, PTP... 457 e-129
Os01g0150500 Protein tyrosine phosphatase-like protein, PTP... 331 3e-91
Os04g0271200 Silent information regulator protein Sir2 fami... 306 7e-84
Os01g0150200 Protein tyrosine phosphatase-like protein, PTP... 300 4e-82
Os08g0393600 Protein tyrosine phosphatase-like protein, PTP... 125 3e-29
Os05g0460800 Protein tyrosine phosphatase-like protein, PTP... 79 3e-15
>Os01g0150800 Protein tyrosine phosphatase-like protein, PTPLA family protein
Length = 225
Score = 457 bits (1177), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MPEEAAGMASVLRRLYLSVYNWIVFIGWVQVSWSMILALLEKRYEAVYAAVEQHLLFAQT 60
MPEEAAGMASVLRRLYLSVYNWIVFIGWVQVSWSMILALLEKRYEAVYAAVEQHLLFAQT
Sbjct: 1 MPEEAAGMASVLRRLYLSVYNWIVFIGWVQVSWSMILALLEKRYEAVYAAVEQHLLFAQT 60
Query: 61 AAIMEILHSIVGLVRSPVSSTLPQITARLFMIWGILRSFPEIHTHIFVTSLLISWCITEV 120
AAIMEILHSIVGLVRSPVSSTLPQITARLFMIWGILRSFPEIHTHIFVTSLLISWCITEV
Sbjct: 61 AAIMEILHSIVGLVRSPVSSTLPQITARLFMIWGILRSFPEIHTHIFVTSLLISWCITEV 120
Query: 121 TRYSFNGMKESFGFTPSWLLWLRYSTFIVCFPIGMVSEVGLVYIVVPFMKASEKYCLRMP 180
TRYSFNGMKESFGFTPSWLLWLRYSTFIVCFPIGMVSEVGLVYIVVPFMKASEKYCLRMP
Sbjct: 121 TRYSFNGMKESFGFTPSWLLWLRYSTFIVCFPIGMVSEVGLVYIVVPFMKASEKYCLRMP 180
Query: 181 NKWNFSIKYFYASVFFMALYAPVYPHLFHYLIVQRKKALAKSKTT 225
NKWNFSIKYFYASVFFMALYAPVYPHLFHYLIVQRKKALAKSKTT
Sbjct: 181 NKWNFSIKYFYASVFFMALYAPVYPHLFHYLIVQRKKALAKSKTT 225
>Os01g0150500 Protein tyrosine phosphatase-like protein, PTPLA family protein
Length = 234
Score = 331 bits (848), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 163/233 (69%), Positives = 187/233 (80%), Gaps = 13/233 (5%)
Query: 6 AGMASVLRRLYLSVYNWIVFIGWVQVSWSMILALLEKRYEAVYAAVEQHLLFAQTAAIME 65
A S++RRLYLS+YNW+ FIGW QV M LALL+K +EAVYAA+E+ LLF QTAAI+E
Sbjct: 2 AADGSMVRRLYLSIYNWVAFIGWAQVLCYMTLALLDKGHEAVYAAIERPLLFTQTAAILE 61
Query: 66 IL-------------HSIVGLVRSPVSSTLPQITARLFMIWGILRSFPEIHTHIFVTSLL 112
+L + GLVRSPVSSTLPQIT RLF+ WGIL SFPE ++IFVTSLL
Sbjct: 62 VLVFPSSLPLFIRENWRLRGLVRSPVSSTLPQITGRLFITWGILWSFPETQSYIFVTSLL 121
Query: 113 ISWCITEVTRYSFNGMKESFGFTPSWLLWLRYSTFIVCFPIGMVSEVGLVYIVVPFMKAS 172
I WCI EVTRYSF GMKESFGFTPSWLLWLRYSTFI CFP+G+VSE+ L Y V+PFMKAS
Sbjct: 122 ICWCIIEVTRYSFYGMKESFGFTPSWLLWLRYSTFIACFPVGVVSEICLAYTVLPFMKAS 181
Query: 173 EKYCLRMPNKWNFSIKYFYASVFFMALYAPVYPHLFHYLIVQRKKALAKSKTT 225
EKYCLRMPNKWNFS YFYA+VFFMA Y PV P+LFH++I QRKKAL+K+KTT
Sbjct: 182 EKYCLRMPNKWNFSFNYFYANVFFMAFYVPVVPYLFHHMIAQRKKALSKAKTT 234
>Os04g0271200 Silent information regulator protein Sir2 family protein
Length = 221
Score = 306 bits (784), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 144/210 (68%), Positives = 172/210 (81%)
Query: 6 AGMASVLRRLYLSVYNWIVFIGWVQVSWSMILALLEKRYEAVYAAVEQHLLFAQTAAIME 65
AG+ S +RRLYLSVYNW VF GW QV + + LLE +EAVYAAVE+ L FAQTAA +E
Sbjct: 2 AGVGSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHEAVYAAVERPLQFAQTAAFLE 61
Query: 66 ILHSIVGLVRSPVSSTLPQITARLFMIWGILRSFPEIHTHIFVTSLLISWCITEVTRYSF 125
ILH +VGLVRSPVS+TLPQI +RLF+ WGIL SFPE H+HI VTSL+ISW ITE+ RYSF
Sbjct: 62 ILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIRYSF 121
Query: 126 NGMKESFGFTPSWLLWLRYSTFIVCFPIGMVSEVGLVYIVVPFMKASEKYCLRMPNKWNF 185
GMKE+FGF PSWLLWLRYSTF+V +P G+ SEVGL+YI +P+MKASEKYCLRMPNKWNF
Sbjct: 122 FGMKEAFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKASEKYCLRMPNKWNF 181
Query: 186 SIKYFYASVFFMALYAPVYPHLFHYLIVQR 215
S +FYAS+ +A+Y P PH+F Y++ QR
Sbjct: 182 SFDFFYASILSLAIYVPGSPHMFTYMLAQR 211
>Os01g0150200 Protein tyrosine phosphatase-like protein, PTPLA family protein
Length = 221
Score = 300 bits (769), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 141/209 (67%), Positives = 170/209 (81%)
Query: 7 GMASVLRRLYLSVYNWIVFIGWVQVSWSMILALLEKRYEAVYAAVEQHLLFAQTAAIMEI 66
G+ S +RRLYLSVYNW VF GW QV + + LLE +EAVYAAVE+ L FAQTAA +EI
Sbjct: 3 GVGSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHEAVYAAVERPLQFAQTAAFLEI 62
Query: 67 LHSIVGLVRSPVSSTLPQITARLFMIWGILRSFPEIHTHIFVTSLLISWCITEVTRYSFN 126
LH +VGLVRSPVS+TLPQI +RLF+ WGIL SFPE H+HI VTSL+ISW ITE+ RYSF
Sbjct: 63 LHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIRYSFF 122
Query: 127 GMKESFGFTPSWLLWLRYSTFIVCFPIGMVSEVGLVYIVVPFMKASEKYCLRMPNKWNFS 186
GMKE+FGF PSWLLWLRYSTF+V +P G+ SEVGL+YI +P+MKA+EKYCLRMPNKWNFS
Sbjct: 123 GMKETFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKATEKYCLRMPNKWNFS 182
Query: 187 IKYFYASVFFMALYAPVYPHLFHYLIVQR 215
+ YAS+ +A+Y P PH+F Y++ QR
Sbjct: 183 FDFSYASILSLAVYVPGSPHMFTYMLAQR 211
>Os08g0393600 Protein tyrosine phosphatase-like protein, PTPLA family protein
Length = 115
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/71 (88%), Positives = 65/71 (91%)
Query: 6 AGMASVLRRLYLSVYNWIVFIGWVQVSWSMILALLEKRYEAVYAAVEQHLLFAQTAAIME 65
AG ASV+RRLYLS YNWIVFIGWVQVSWSMILALLE YEAVYAAVEQHLLFAQTAAIME
Sbjct: 33 AGNASVMRRLYLSFYNWIVFIGWVQVSWSMILALLENGYEAVYAAVEQHLLFAQTAAIME 92
Query: 66 ILHSIVGLVRS 76
ILHSIVG + S
Sbjct: 93 ILHSIVGEISS 103
>Os05g0460800 Protein tyrosine phosphatase-like protein, PTPLA family protein
Length = 219
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 6/211 (2%)
Query: 14 RLYLSVYNWIVFIGWVQVSWSMILALLE-KRYEAVYAAVEQHLLFAQTAAIMEILHSIVG 72
+LYL YN + +GW ++ L + YA + QT AI+E +H+ +G
Sbjct: 6 QLYLLSYNSVQALGWFVALLRLLPCLAPPSSVHSSYAVAGDLVCLLQTWAILETIHAAIG 65
Query: 73 LVRSPVSSTLPQITARLFMIWGILRSFPEIHTHIFVTSLLISWCITEVTRYSFNGMKESF 132
LV + Q R + ++R PE+ + V ++W I+EV RYS + +
Sbjct: 66 LVHTSPLLAFLQWGGRTHFVLAVVRQIPEVQSSPSVFITFMAWSISEVIRYSHYAL-TTL 124
Query: 133 GFTPSWLLWLRYSTFIVCFPIGM-VSEVGLVYIVVPFMKASEKYCLRMPNKWNFSIKYFY 191
P WL +LRY+ FI +PIG+ E+ +Y +PF+K + Y FS+ Y
Sbjct: 125 KVCPPWLTYLRYTAFIPLYPIGVGPGEMWTMYQALPFVKERKLYSGFFG---KFSMSYHS 181
Query: 192 ASVFFMALYAPVYPHLFHYLIVQRKKALAKS 222
V +A+Y ++ L+ ++ QR+ L KS
Sbjct: 182 FLVAVLAVYPFLWMKLYLHVFKQRRSKLGKS 212
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.330 0.139 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,957,268
Number of extensions: 251810
Number of successful extensions: 655
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 651
Number of HSP's successfully gapped: 6
Length of query: 225
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 128
Effective length of database: 11,971,043
Effective search space: 1532293504
Effective search space used: 1532293504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 154 (63.9 bits)