Os05g0460800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein tyrosine phosphatase-like protein, PTPLA family protein.
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Os05g0460800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein tyrosine phosphatase-like protein, PTPLA family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.39 | 0.227 | 10 | -1.5 | 0.764 | -0.559 | 0.397 | -0.87 | -0.371 | 5.14 | 27.5 | 74 | -- | -- |
| 24.56 | 0.233 | 10.1 | -1.63 | 0.737 | -0.494 | 0.149 | -- | -0.4 | 5.11 | 27.5 | 74 | -- | -- |
| 23.74 | 0.227 | 10 | -1.53 | 0.769 | -0.554 | -- | -0.731 | -0.375 | 5.1 | 27.5 | 70 | -- | -- |
| 24.47 | 0.23 | 10.1 | -1.64 | 0.761 | -0.516 | -- | -- | -0.409 | 5.13 | 27.81 | 72 | -- | -- |
| 47.87 | 0.324 | 10 | -1.49 | -- | -0.36 | -- | -0.534 | -0.308 | -- | 23.38 | 38 | -- | -- |
| 28.09 | 0.248 | 10 | -1.51 | 0.643 | -- | 0.158 | -- | -0.292 | 5.76 | -- | -- | -- | -- |
| 28.15 | 0.248 | 10 | -1.51 | 0.644 | -- | -- | -- | -0.293 | 5.74 | -- | -- | -- | -- |
| 48.33 | 0.325 | 10 | -1.55 | -- | -0.299 | -- | -- | -0.319 | -- | 23.38 | 38 | -- | -- |
| 47.66 | 0.322 | 9.92 | -- | 0.646 | 1.03 | -- | -- | 0.182 | 5.64 | 76.16 | 47520 | -- | -- |
| 49.64 | 0.329 | 10 | -1.49 | -- | -- | -- | -- | -0.278 | -- | -- | -- | -- | -- |
| 88.43 | 0.44 | 9.99 | -- | 0.62 | -- | -- | -- | -0.124 | 5.85 | -- | -- | -- | -- |
| 69.31 | 0.388 | 9.93 | -- | -- | 1 | -- | -- | 0.189 | -- | 77.18 | 47520 | -- | -- |
| 108.37 | 0.486 | 10 | -- | -- | -- | -- | -- | -0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.95 | temperature | 25 | 30 | < th | dose dependent | sin | 19 | NA |
| 13 | 23.45 | temperature | 25 | 270 | > th | dose independent | rect. | 10 | 19 |
| 15 | 23.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 23 | 23.55 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 27 | 23.60 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 42 | 23.68 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 22 |
| 46 | 23.69 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 47 | 23.69 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 51 | 23.69 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 53 | 23.70 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 15 |
| 56 | 23.70 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 67 | 23.72 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 68 | 23.72 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 77 | 23.75 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 89 | 23.78 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 12 |
| 92 | 23.78 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 93 | 23.78 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 101 | 23.80 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 103 | 23.80 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 14 |
| 114 | 23.81 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 136 | 23.83 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 179 | 23.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 192 | 23.89 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 200 | 23.90 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 275 | 23.98 | temperature | 25 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 282 | 23.98 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 353 | 24.04 | temperature | 15 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 447 | 24.12 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 23 |
| 454 | 24.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 16 |
| 478 | 24.14 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 484 | 24.14 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 17 |
| 491 | 24.15 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 23 |
| 552 | 24.20 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 23 |
| 564 | 24.20 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 600 | 24.23 | temperature | 15 | 10 | > th | dose dependent | sin | 17 | NA |
| 630 | 24.25 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 23 |
| 642 | 24.26 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 680 | 24.28 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 23 |
| 740 | 24.31 | temperature | 25 | 270 | > th | dose independent | rect. | 19 | 23 |
| 791 | 24.33 | temperature | 25 | 270 | < th | dose independent | rect. | 19 | 23 |
| 878 | 24.37 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 910 | 24.39 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 921 | 24.40 | atmosphere | 995 | 10 | > th | dose dependent | sin | 17 | NA |
| 960 | 24.42 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 982 | 24.43 | temperature | 20 | 10 | < th | dose independent | sin | 18 | NA |