BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0460800 Os05g0460800|AK058842
         (219 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59770.1  | chr5:24079521-24081195 REVERSE LENGTH=273          201   2e-52
AT5G10480.3  | chr5:3298047-3300048 REVERSE LENGTH=231             76   2e-14

>AT5G59770.1 | chr5:24079521-24081195 REVERSE LENGTH=273
          Length = 272

 Score =  201 bits (512), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/170 (60%), Positives = 124/170 (72%), Gaps = 1/170 (0%)

Query: 36  SVHSSYAVAGDLVCLLQTWAILETIHAAIGLVHTSPLLAFLQWGGRTHFVLAVVRQIPEV 95
           ++ S+YA AG L+ L QT AILE +H AIG+V +  L   +QW GRTHF+LA+V QI EV
Sbjct: 87  TIISAYASAGFLISLFQTAAILEVLHGAIGIVPSGFLSPLMQWSGRTHFILAIVGQIKEV 146

Query: 96  QSSPSVFITFMAWSISEVIRYSHYALTTLKVCPPWLTYLRYTAFIPLYPIGVGPGEMWTM 155
           Q SP + IT +AW I E+IRY HYA T L  CP WLTYLRYT FI +YP G+  GE+  M
Sbjct: 147 QDSPWLSITLVAWCIGEMIRYPHYAFTCLGRCPYWLTYLRYTGFIVIYPTGL-VGELLIM 205

Query: 156 YQALPFVKERKLYSGFFGKFSMSYHSFLVAVLAVYPFLWMKLYLHVFKQR 205
           Y+ALP+VKER LY+ FF  F  SY+ FL AVL VYPFLW+KLYL +FKQR
Sbjct: 206 YKALPYVKERNLYANFFSVFPFSYYDFLWAVLLVYPFLWLKLYLQLFKQR 255



>AT5G10480.3 | chr5:3298047-3300048 REVERSE LENGTH=231
          Length = 230

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 103/221 (46%), Gaps = 17/221 (7%)

Query: 6   QLYLLSYNSVQALGWFVXXXXXXXXXXXXSSVHSSYAVAGDLVCLLQTWAILETIHAAIG 65
           ++YL  YN +   GW              +   + Y      + L QT A+LE +H  +G
Sbjct: 10  RVYLTLYNWIVFAGW-AQVLYLAITTLKETGYENVYDAIEKPLQLAQTAAVLEILHGLVG 68

Query: 66  LVHTSPLLAFL-QWGGRTHFVLAVVRQIPEVQSSPSVFITFMAWSIS---------EVIR 115
           LV  SP+ A L Q G R      ++   PEV+S   V    ++WSI+         E+IR
Sbjct: 69  LVR-SPVSATLPQIGSRLFLTWGILYSFPEVRSHFLVTSLVISWSITEFPITTWIVEIIR 127

Query: 116 YSHYAL-TTLKVCPPWLTYLRYTAFIPLYPIGVGPGEMWTMYQALPFVKERKLYS---GF 171
           YS +     L   P W  +LRY++F+ LYP G+   E+  +Y ALP +K  ++YS     
Sbjct: 128 YSFFGFKEALGFAPSWHLWLRYSSFLLLYPTGI-TSEVGLIYLALPHIKTSEMYSVRMPN 186

Query: 172 FGKFSMSYHSFLVAVLAVYPFLWMKLYLHVFKQRRSKLGKS 212
              FS  +    + VLA+Y      +Y ++  QR+  L KS
Sbjct: 187 ILNFSFDFFYATILVLAIYVPGSPHMYRYMLGQRKRALSKS 227



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.138    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,607,802
Number of extensions: 175251
Number of successful extensions: 370
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 2
Length of query: 219
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 124
Effective length of database: 8,502,049
Effective search space: 1054254076
Effective search space used: 1054254076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 109 (46.6 bits)