BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0460800 Os05g0460800|AK058842
(219 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0460800 Protein tyrosine phosphatase-like protein, PTP... 414 e-116
Os01g0150800 Protein tyrosine phosphatase-like protein, PTP... 79 2e-15
Os01g0150200 Protein tyrosine phosphatase-like protein, PTP... 76 2e-14
Os04g0271200 Silent information regulator protein Sir2 fami... 75 4e-14
Os01g0150500 Protein tyrosine phosphatase-like protein, PTP... 65 5e-11
>Os05g0460800 Protein tyrosine phosphatase-like protein, PTPLA family protein
Length = 219
Score = 414 bits (1064), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/219 (94%), Positives = 207/219 (94%)
Query: 1 MARPSQLYLLSYNSVQALGWFVXXXXXXXXXXXXSSVHSSYAVAGDLVCLLQTWAILETI 60
MARPSQLYLLSYNSVQALGWFV SSVHSSYAVAGDLVCLLQTWAILETI
Sbjct: 1 MARPSQLYLLSYNSVQALGWFVALLRLLPCLAPPSSVHSSYAVAGDLVCLLQTWAILETI 60
Query: 61 HAAIGLVHTSPLLAFLQWGGRTHFVLAVVRQIPEVQSSPSVFITFMAWSISEVIRYSHYA 120
HAAIGLVHTSPLLAFLQWGGRTHFVLAVVRQIPEVQSSPSVFITFMAWSISEVIRYSHYA
Sbjct: 61 HAAIGLVHTSPLLAFLQWGGRTHFVLAVVRQIPEVQSSPSVFITFMAWSISEVIRYSHYA 120
Query: 121 LTTLKVCPPWLTYLRYTAFIPLYPIGVGPGEMWTMYQALPFVKERKLYSGFFGKFSMSYH 180
LTTLKVCPPWLTYLRYTAFIPLYPIGVGPGEMWTMYQALPFVKERKLYSGFFGKFSMSYH
Sbjct: 121 LTTLKVCPPWLTYLRYTAFIPLYPIGVGPGEMWTMYQALPFVKERKLYSGFFGKFSMSYH 180
Query: 181 SFLVAVLAVYPFLWMKLYLHVFKQRRSKLGKSGGAKKRA 219
SFLVAVLAVYPFLWMKLYLHVFKQRRSKLGKSGGAKKRA
Sbjct: 181 SFLVAVLAVYPFLWMKLYLHVFKQRRSKLGKSGGAKKRA 219
>Os01g0150800 Protein tyrosine phosphatase-like protein, PTPLA family protein
Length = 225
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 6/211 (2%)
Query: 6 QLYLLSYNSVQALGWFVXXXXXXXXXXXXSSVHSSYAVAGDLVCLLQTWAILETIHAAIG 65
+LYL YN + +GW V + YA + QT AI+E +H+ +G
Sbjct: 14 RLYLSVYNWIVFIGW-VQVSWSMILALLEKRYEAVYAAVEQHLLFAQTAAIMEILHSIVG 72
Query: 66 LVHTSPLLAFLQWGGRTHFVLAVVRQIPEVQSSPSVFITFMAWSISEVIRYSHYAL-TTL 124
LV + Q R + ++R PE+ + V ++W I+EV RYS + +
Sbjct: 73 LVRSPVSSTLPQITARLFMIWGILRSFPEIHTHIFVTSLLISWCITEVTRYSFNGMKESF 132
Query: 125 KVCPPWLTYLRYTAFIPLYPIGVGPGEMWTMYQALPFVKERKLYSGFFG---KFSMSYHS 181
P WL +LRY+ FI +PIG+ E+ +Y +PF+K + Y FS+ Y
Sbjct: 133 GFTPSWLLWLRYSTFIVCFPIGM-VSEVGLVYIVVPFMKASEKYCLRMPNKWNFSIKYFY 191
Query: 182 FLVAVLAVYPFLWMKLYLHVFKQRRSKLGKS 212
V +A+Y ++ L+ ++ QR+ L KS
Sbjct: 192 ASVFFMALYAPVYPHLFHYLIVQRKKALAKS 222
>Os01g0150200 Protein tyrosine phosphatase-like protein, PTPLA family protein
Length = 221
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 91/192 (47%), Gaps = 12/192 (6%)
Query: 6 QLYLLSYNSVQALGWFVXXXXXXXXXXXXSSVHSSYAVAGDLVCLLQTWAILETIHAAIG 65
+LYL YN GW S + YA + QT A LE +H +G
Sbjct: 10 RLYLSVYNWAVFFGW-AQVLYYAVTTLLESGHEAVYAAVERPLQFAQTAAFLEILHGLVG 68
Query: 66 LVHTSPLLAFL-QWGGRTHFVLAVVRQIPEVQSSPSVFITFMAWSISEVIRYSHYAL-TT 123
LV SP+ A L Q G R ++ PE S V ++WSI+E+IRYS + + T
Sbjct: 69 LVR-SPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKET 127
Query: 124 LKVCPPWLTYLRYTAFIPLYPIGVGPGEMWTMYQALPFVKERKLY-----SGFFGKFSMS 178
P WL +LRY+ F+ LYP G+ E+ +Y ALP++K + Y + + F S
Sbjct: 128 FGFAPSWLLWLRYSTFMVLYPTGIS-SEVGLIYIALPYMKATEKYCLRMPNKWNFSFDFS 186
Query: 179 YHSFLVAVLAVY 190
Y S L LAVY
Sbjct: 187 YASIL--SLAVY 196
>Os04g0271200 Silent information regulator protein Sir2 family protein
Length = 221
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 6/187 (3%)
Query: 6 QLYLLSYNSVQALGWFVXXXXXXXXXXXXSSVHSSYAVAGDLVCLLQTWAILETIHAAIG 65
+LYL YN GW S + YA + QT A LE +H +G
Sbjct: 10 RLYLSVYNWAVFFGW-AQVLYYAVTTLLESGHEAVYAAVERPLQFAQTAAFLEILHGLVG 68
Query: 66 LVHTSPLLAFL-QWGGRTHFVLAVVRQIPEVQSSPSVFITFMAWSISEVIRYSHYAL-TT 123
LV SP+ A L Q G R ++ PE S V ++WSI+E+IRYS + +
Sbjct: 69 LVR-SPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKEA 127
Query: 124 LKVCPPWLTYLRYTAFIPLYPIGVGPGEMWTMYQALPFVKERKLYS-GFFGKFSMSYHSF 182
P WL +LRY+ F+ LYP G+ E+ +Y ALP++K + Y K++ S+ F
Sbjct: 128 FGFAPSWLLWLRYSTFMVLYPTGIS-SEVGLIYIALPYMKASEKYCLRMPNKWNFSFDFF 186
Query: 183 LVAVLAV 189
++L++
Sbjct: 187 YASILSL 193
>Os01g0150500 Protein tyrosine phosphatase-like protein, PTPLA family protein
Length = 234
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 93/224 (41%), Gaps = 19/224 (8%)
Query: 6 QLYLLSYNSVQALGWFVXXXXXXXXXXXXSSVHSSYAVAGDLVCLLQTWAILETI----- 60
+LYL YN V +GW + YA + QT AILE +
Sbjct: 10 RLYLSIYNWVAFIGW-AQVLCYMTLALLDKGHEAVYAAIERPLLFTQTAAILEVLVFPSS 68
Query: 61 --------HAAIGLVHTSPLLAFLQWGGRTHFVLAVVRQIPEVQSSPSVFITFMAWSISE 112
GLV + Q GR ++ PE QS V + W I E
Sbjct: 69 LPLFIRENWRLRGLVRSPVSSTLPQITGRLFITWGILWSFPETQSYIFVTSLLICWCIIE 128
Query: 113 VIRYSHYAL-TTLKVCPPWLTYLRYTAFIPLYPIGVGPGEMWTMYQALPFVKERKLYS-G 170
V RYS Y + + P WL +LRY+ FI +P+GV E+ Y LPF+K + Y
Sbjct: 129 VTRYSFYGMKESFGFTPSWLLWLRYSTFIACFPVGVV-SEICLAYTVLPFMKASEKYCLR 187
Query: 171 FFGKFSMSYHSFLVAV--LAVYPFLWMKLYLHVFKQRRSKLGKS 212
K++ S++ F V +A Y + L+ H+ QR+ L K+
Sbjct: 188 MPNKWNFSFNYFYANVFFMAFYVPVVPYLFHHMIAQRKKALSKA 231
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.138 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,337,379
Number of extensions: 272414
Number of successful extensions: 498
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 491
Number of HSP's successfully gapped: 5
Length of query: 219
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 122
Effective length of database: 11,971,043
Effective search space: 1460467246
Effective search space used: 1460467246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 154 (63.9 bits)