Os04g0271200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Silent information regulator protein Sir2 family protein.
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Os04g0271200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Silent information regulator protein Sir2 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.5 | 0.324 | 11 | -0.453 | 1.49 | -0.788 | 0.0269 | -3.41 | 0.284 | 5.65 | 0.7699 | 4211 | -- | -- |
| 55.39 | 0.347 | 10.9 | 0.154 | 1.48 | -0.505 | 0.37 | -- | 0.389 | 6.07 | 21.89 | 3239 | -- | -- |
| 47.25 | 0.32 | 11 | -0.433 | 1.49 | -0.799 | -- | -3.44 | 0.275 | 5.61 | 0.6693 | 4183 | -- | -- |
| 55.66 | 0.347 | 10.9 | 0.138 | 1.48 | -0.499 | -- | -- | 0.395 | 6.02 | 22.04 | 3241 | -- | -- |
| 123.14 | 0.517 | 11 | 0.291 | -- | -0.949 | -- | -3.03 | 0.446 | -- | 3.703 | 3690 | -- | -- |
| 61.48 | 0.368 | 11 | 0.11 | 1.52 | -- | 0.245 | -- | 0.325 | 6.05 | -- | -- | -- | -- |
| 61.62 | 0.368 | 11 | 0.112 | 1.52 | -- | -- | -- | 0.324 | 6.02 | -- | -- | -- | -- |
| 100.92 | 0.468 | 11.1 | 0.24 | -- | -1.46 | -- | -- | 0.304 | -- | 2.28 | 3599 | -- | -- |
| 52.78 | 0.338 | 11 | -- | 1.49 | -0.498 | -- | -- | 0.41 | 5.99 | 22.15 | 13292 | -- | -- |
| 180.82 | 0.628 | 11 | 0.156 | -- | -- | -- | -- | 0.359 | -- | -- | -- | -- | -- |
| 61.95 | 0.368 | 11 | -- | 1.52 | -- | -- | -- | 0.312 | 6.02 | -- | -- | -- | -- |
| 76.59 | 0.408 | 10.9 | -- | -- | -2.3 | -- | -- | 0.642 | -- | 2.015 | 3613 | -- | -- |
| 181.46 | 0.629 | 11 | -- | -- | -- | -- | -- | 0.341 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.65 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 24 | 19 |
| 8 | 47.86 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 16 |
| 9 | 47.86 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 16 |
| 10 | 47.88 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 16 |
| 22 | 47.96 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 13 |
| 30 | 47.99 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 1 | NA |
| 34 | 48.05 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 39 | 48.07 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 55 | 48.13 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 7 |
| 60 | 48.14 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 62 | 48.14 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 20 |
| 66 | 48.16 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 84 | 48.18 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 22 |
| 85 | 48.18 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 22 |
| 129 | 48.26 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 19 |
| 131 | 48.26 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 20 |
| 133 | 48.26 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 20 |
| 141 | 48.27 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 8 |
| 148 | 48.28 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 149 | 48.28 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 150 | 48.28 | precipitation | 0.1 | 43200 | > th | dose dependent | no | NA | NA |
| 151 | 48.28 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 155 | 48.29 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 2 | NA |
| 156 | 48.29 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 2 | NA |
| 162 | 48.29 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 2 | NA |
| 167 | 48.30 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 175 | 48.30 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 8 |
| 179 | 48.30 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 10 | 23 |
| 243 | 48.37 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 14 |
| 269 | 48.38 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 270 | 48.39 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 275 | 48.39 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 11 | NA |
| 277 | 48.39 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 14 |
| 415 | 48.52 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 461 | 48.56 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 16 |
| 480 | 48.58 | precipitation | 0.1 | 43200 | > th | dose independent | no | NA | NA |
| 481 | 48.58 | precipitation | 0.1 | 43200 | < th | dose independent | no | NA | NA |
| 489 | 48.58 | precipitation | 0.1 | 43200 | < th | dose dependent | no | NA | NA |
| 496 | 48.59 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 503 | 48.59 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 23 |
| 521 | 48.61 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 11 | NA |
| 524 | 48.61 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 17 | 13 |
| 536 | 48.62 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 11 | NA |
| 538 | 48.62 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 11 | NA |
| 584 | 48.67 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 586 | 48.67 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 618 | 48.71 | radiation | 1.0 | 4320 | < th | dose dependent | sin | 13 | NA |
| 621 | 48.71 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 4 |
| 634 | 48.73 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 636 | 48.73 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 639 | 48.73 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 11 | 19 |
| 644 | 48.74 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 16 |
| 662 | 48.76 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 666 | 48.76 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 16 |
| 685 | 48.78 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 697 | 48.78 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 703 | 48.78 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 23 |
| 709 | 48.79 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 810 | 48.87 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 11 |
| 811 | 48.87 | wind | 1.0 | 14400 | > th | dose independent | rect. | 10 | 14 |
| 816 | 48.88 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 24 | 13 |
| 822 | 48.88 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 24 | 13 |
| 829 | 48.89 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 24 | 13 |
| 836 | 48.90 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 840 | 48.90 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 11 |
| 890 | 48.94 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 892 | 48.94 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 24 | 13 |
| 929 | 48.98 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 948 | 48.99 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 8 |