Os01g0150200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein tyrosine phosphatase-like protein, PTPLA family protein.
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Os01g0150200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein tyrosine phosphatase-like protein, PTPLA family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.81 | 0.261 | 10.9 | 0.167 | 0.8 | 0.572 | 0.0358 | -0.59 | 0.252 | 7.31 | 21.05 | 250 | -- | -- |
| 31.88 | 0.263 | 10.9 | 0.172 | 0.763 | 0.604 | -0.00151 | -- | 0.255 | 7.08 | 29.98 | 269 | -- | -- |
| 30.8 | 0.258 | 10.9 | 0.166 | 0.802 | 0.568 | -- | -0.593 | 0.25 | 7.33 | 20 | 249 | -- | -- |
| 31.67 | 0.262 | 10.9 | 0.157 | 0.802 | 0.615 | -- | -- | 0.258 | 6.65 | 50 | 269 | -- | -- |
| 34.79 | 0.275 | 10.9 | 0.178 | -- | 1.26 | -- | -0.238 | 0.262 | -- | 5.472 | 687 | -- | -- |
| 35.79 | 0.28 | 10.9 | 0.13 | 1.05 | -- | -0.306 | -- | 0.21 | 5.28 | -- | -- | -- | -- |
| 36.02 | 0.281 | 10.9 | 0.13 | 1.05 | -- | -- | -- | 0.211 | 5.32 | -- | -- | -- | -- |
| 34.89 | 0.275 | 10.9 | 0.183 | -- | 1.26 | -- | -- | 0.277 | -- | 5.27 | 687 | -- | -- |
| 32.17 | 0.264 | 10.9 | -- | 0.812 | 0.597 | -- | -- | 0.237 | 6.57 | 97.39 | 268 | -- | -- |
| 93.11 | 0.451 | 10.9 | 0.166 | -- | -- | -- | -- | 0.237 | -- | -- | -- | -- | -- |
| 36.46 | 0.282 | 10.9 | -- | 1.05 | -- | -- | -- | 0.197 | 5.31 | -- | -- | -- | -- |
| 35.7 | 0.278 | 10.9 | -- | -- | 1.25 | -- | -- | 0.258 | -- | 6.83 | 675 | -- | -- |
| 93.83 | 0.452 | 10.9 | -- | -- | -- | -- | -- | 0.219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.46 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 4 | 28.78 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 5 | 28.82 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 10 |
| 7 | 28.84 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 10 |
| 20 | 29.32 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 22 | 29.41 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 11 |
| 44 | 29.70 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 46 | 29.76 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 10 |
| 49 | 29.79 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 50 | 29.81 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 8 |
| 62 | 29.92 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 63 | 29.94 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 64 | 29.94 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 68 | 29.98 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 10 |
| 106 | 30.06 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 6 | 17 |
| 144 | 30.13 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 164 | 30.14 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 221 | 30.21 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 6 |
| 223 | 30.21 | temperature | 10.0 | 14400 | > th | dose dependent | sin | 15 | NA |
| 237 | 30.21 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 18 | 17 |
| 238 | 30.21 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 279 | 30.23 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 15 | NA |
| 296 | 30.23 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 7 | 17 |
| 297 | 30.23 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 9 | 17 |
| 334 | 30.24 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 335 | 30.24 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 338 | 30.24 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 339 | 30.24 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 3 |
| 357 | 30.24 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 10 | 14 |
| 429 | 30.25 | temperature | 10.0 | 14400 | > th | dose dependent | no | NA | NA |
| 430 | 30.25 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 442 | 30.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 12 |
| 485 | 30.25 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 4 | 19 |
| 543 | 30.26 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 547 | 30.26 | temperature | 30.0 | 14400 | < th | dose dependent | no | NA | NA |
| 548 | 30.26 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 6 | 5 |
| 579 | 30.26 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 17 | 15 |
| 596 | 30.26 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 7 | 17 |
| 597 | 30.26 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 17 |
| 689 | 30.27 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 692 | 30.27 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 6 | 5 |
| 806 | 30.28 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 10 | 14 |
| 863 | 30.29 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 864 | 30.29 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 868 | 30.29 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 872 | 30.29 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 963 | 30.30 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |