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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0150800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein tyrosine phosphatase-like protein, PTPLA family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.35 (0.028) R2 : 0.0142
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.151 (0.059) R2dN8 : 0.0183 R2N8 : 0.0142
σ : 0.528
deviance : 127.77
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
107.03 0.486 3.4 -0.601 0.435 -0.336 -0.962 0.457 0.0134 0.595 20.4 104 -- --
107.75 0.483 3.39 -0.529 0.437 -0.383 -0.796 -- 0.0316 0.446 19.9 90 -- --
110.36 0.489 3.39 -0.555 0.413 -0.347 -- 0.292 0.0239 0.494 20.66 301 -- --
110.35 0.489 3.39 -0.486 0.446 -0.369 -- -- 0.0388 0.211 20.15 80 -- --
116.93 0.504 3.39 -0.671 -- -0.407 -- 0.518 -0.00622 -- 20.79 889 -- --
113.02 0.498 3.37 -0.419 0.364 -- -0.77 -- 0.0996 0.36 -- -- -- --
115.48 0.503 3.37 -0.388 0.368 -- -- -- 0.104 23.9 -- -- -- --
117.68 0.505 3.39 -0.558 -- -0.449 -- -- -0.0146 -- 21.3 1086 -- --
116.29 0.502 3.37 -- 0.428 -0.287 -- -- 0.102 0.168 20.2 72 -- --
124.02 0.52 3.36 -0.377 -- -- -- -- 0.109 -- -- -- -- --
119.46 0.511 3.36 -- 0.363 -- -- -- 0.147 23.9 -- -- -- --
124.45 0.52 3.37 -- -- -0.258 -- -- 0.071 -- 22.39 916 -- --
127.77 0.528 3.35 -- -- -- -- -- 0.151 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 101.91 wind 1.0 30 > th dose independent rect. 2 1
2 101.91 temperature 20.0 270 > th dose independent rect. 23 4
3 101.96 atmosphere 1015.0 30 < th dose dependent rect. 2 1
6 102.05 temperature 30.0 30 < th dose dependent rect. 2 1
7 102.17 wind 9.0 30 < th dose independent rect. 2 1
8 102.17 temperature 10.0 30 > th dose independent rect. 2 1
10 102.17 temperature 30.0 30 < th dose independent rect. 2 1
11 102.17 humidity 50.0 30 > th dose independent rect. 2 1
14 102.17 atmosphere 995.0 30 > th dose independent rect. 2 1
15 102.17 atmosphere 1010.0 30 < th dose independent rect. 2 1
17 102.17 radiation 1.0 30 < th dose independent rect. 2 1
22 102.17 precipitation 0.1 30 < th dose independent rect. 2 1
23 102.17 temperature 10.0 30 > th dose independent rect. 3 23
24 102.17 radiation 1.0 30 < th dose dependent rect. 2 1
29 102.17 precipitation 0.1 30 < th dose dependent rect. 2 1
32 102.23 wind 3.0 30 < th dose independent rect. 2 1
34 102.24 humidity 50.0 30 > th dose dependent rect. 2 1
39 102.30 temperature 10.0 30 > th dose dependent rect. 2 1
42 102.33 wind 9.0 30 < th dose dependent rect. 2 1
43 102.34 atmosphere 995.0 30 > th dose dependent rect. 2 1
98 102.80 temperature 15.0 270 > th dose dependent rect. 23 4
121 103.48 temperature 15.0 90 > th dose dependent rect. 1 3
134 103.90 wind 9.0 1440 < th dose independent rect. 3 1
135 103.90 temperature 10.0 1440 > th dose independent rect. 3 1
138 103.90 temperature 30.0 1440 < th dose independent rect. 3 1
142 103.90 humidity 50.0 1440 > th dose independent rect. 3 1
151 103.90 atmosphere 995.0 1440 > th dose independent rect. 3 1
152 103.90 radiation 1.0 1440 < th dose independent rect. 3 1
172 103.90 temperature 10.0 1440 > th dose independent rect. 4 23
175 103.90 radiation 1.0 1440 < th dose dependent rect. 3 1
194 104.03 temperature 20.0 10 > th dose independent rect. 17 11
198 104.08 precipitation 0.1 10 < th dose independent rect. 3 23
200 104.08 precipitation 0.1 10 < th dose dependent rect. 3 23
223 104.35 temperature 20.0 10 > th dose independent rect. 14 14
224 104.36 atmosphere 1000.0 10 > th dose independent rect. 3 23
232 104.51 temperature 20.0 90 > th dose independent rect. 13 15
243 104.71 atmosphere 995.0 90 > th dose dependent rect. 15 9
258 104.89 temperature 20.0 720 > th dose independent rect. 15 11
272 105.03 temperature 20.0 270 > th dose independent sin 11 NA
273 105.03 atmosphere 1005.0 90 > th dose dependent rect. 15 8
291 105.19 atmosphere 995.0 10 > th dose dependent rect. 15 10
298 105.23 temperature 20.0 10 > th dose independent rect. 19 9
300 105.24 temperature 20.0 10 > th dose independent rect. 21 7
313 105.32 atmosphere 995.0 1440 > th dose independent rect. 16 9
324 105.39 temperature 30.0 270 < th dose dependent rect. 18 14
370 105.58 atmosphere 995.0 1440 > th dose independent rect. 6 19
374 105.59 wind 9.0 30 < th dose independent rect. 3 23
381 105.61 temperature 20.0 90 < th dose independent rect. 19 12
394 105.67 radiation 40.0 4320 > th dose independent rect. 15 1
415 105.68 temperature 20.0 270 < th dose independent rect. 18 14
478 105.81 temperature 20.0 270 < th dose independent sin 12 NA
487 105.83 temperature 30.0 90 < th dose independent rect. 3 22
496 105.85 humidity 50.0 90 > th dose independent rect. 3 22
501 105.87 temperature 20.0 720 < th dose independent rect. 18 6
517 105.92 atmosphere 995.0 43200 < th dose independent rect. 17 21
529 105.96 atmosphere 995.0 43200 > th dose independent rect. 1 11
530 105.96 atmosphere 995.0 43200 < th dose independent rect. 1 11
533 105.96 radiation 40.0 4320 > th dose dependent rect. 15 1
544 105.96 atmosphere 1015.0 10 < th dose dependent rect. 17 11
558 105.98 temperature 20.0 30 > th dose independent rect. 23 23
564 105.99 temperature 10.0 270 > th dose dependent sin 11 NA
576 106.02 atmosphere 995.0 43200 > th dose independent rect. 24 13
578 106.03 atmosphere 995.0 43200 > th dose independent sin 5 NA
584 106.04 atmosphere 995.0 43200 < th dose independent rect. 2 9
587 106.04 temperature 20.0 10 < th dose independent rect. 19 12
591 106.05 atmosphere 995.0 43200 < th dose independent sin 6 NA
598 106.05 atmosphere 995.0 43200 < th dose dependent rect. 15 19
605 106.06 atmosphere 995.0 43200 < th dose dependent sin 8 NA
622 106.09 wind 3.0 14400 < th dose independent rect. 1 1
626 106.09 atmosphere 995.0 43200 > th dose independent rect. 17 21
652 106.13 atmosphere 995.0 43200 > th dose independent rect. 22 17
662 106.14 atmosphere 995.0 43200 < th dose independent rect. 21 18
666 106.14 radiation 1.0 4320 < th dose dependent rect. 7 1
688 106.16 temperature 20.0 10 > th dose independent rect. 8 20
693 106.16 atmosphere 995.0 43200 < th dose dependent rect. 21 14
715 106.18 temperature 20.0 90 > th dose independent rect. 6 22
717 106.18 humidity 90.0 4320 > th dose dependent rect. 7 2
740 106.19 temperature 30.0 90 < th dose dependent rect. 3 22
765 106.21 atmosphere 995.0 43200 < th dose independent rect. 5 3
766 106.21 atmosphere 995.0 43200 < th dose independent rect. 4 5
780 106.21 atmosphere 995.0 43200 < th dose dependent rect. 2 7
787 106.23 temperature 20.0 10 < th dose independent sin 11 NA
820 106.26 atmosphere 995.0 43200 > th dose independent rect. 4 5
821 106.26 atmosphere 1005.0 90 > th dose independent rect. 15 9
827 106.26 temperature 10.0 720 > th dose dependent rect. 15 12
842 106.28 radiation 1.0 4320 > th dose independent rect. 7 1
851 106.29 wind 3.0 14400 > th dose independent rect. 1 1
852 106.29 radiation 1.0 4320 < th dose independent rect. 7 1
853 106.29 wind 3.0 14400 < th dose independent rect. 23 4
864 106.29 atmosphere 995.0 43200 < th dose dependent rect. 4 4
866 106.29 atmosphere 995.0 43200 < th dose dependent rect. 11 21
904 106.33 wind 3.0 14400 > th dose independent rect. 23 4
913 106.34 precipitation 0.1 4320 < th dose independent rect. 7 1
922 106.34 atmosphere 995.0 270 > th dose independent rect. 1 23
925 106.34 precipitation 0.1 4320 < th dose dependent rect. 7 1
948 106.36 atmosphere 995.0 43200 < th dose dependent rect. 11 17