Os08g0393600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein tyrosine phosphatase-like protein, PTPLA family protein.
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Os08g0393600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein tyrosine phosphatase-like protein, PTPLA family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 219.94 | 0.697 | 4.29 | -5.09 | 0.981 | 1.15 | -0.755 | -9.77 | -0.57 | 12.9 | 17.1 | 725 | 2.37 | -- |
| 292.43 | 0.796 | 4.11 | -3.22 | 0.722 | 2.71 | 2.57 | -- | -0.0976 | 23 | -3.099 | 816 | 1.4 | -- |
| 221.13 | 0.693 | 4.29 | -5.14 | 0.953 | 1.12 | -- | -10.2 | -0.571 | 12.7 | 16.93 | 706 | 1.93 | -- |
| 318.33 | 0.831 | 4.09 | -3.29 | 0.286 | 1.68 | -- | -- | -0.0738 | 12.9 | 5.858 | 879 | 1.85 | -- |
| 243.89 | 0.727 | 4.26 | -4.63 | -- | 2.13 | -- | -8.76 | -0.505 | -- | 12.36 | 748 | 1.12 | -- |
| 312.31 | 0.828 | 4.02 | -2.94 | 1.24 | -- | -2.23 | -- | 0.132 | 11.8 | -- | -- | -- | -- |
| 333.71 | 0.855 | 4.02 | -3.03 | 1.25 | -- | -- | -- | 0.124 | 11.9 | -- | -- | -- | -- |
| 318.27 | 0.831 | 4.09 | -3.3 | -- | 1.95 | -- | -- | -0.0734 | -- | 2.262 | 857 | 1.47 | -- |
| 572.69 | 1.11 | 3.92 | -- | 1.35 | -1.25 | -- | -- | 0.534 | 8.89 | 2.175 | 220 | 3.24 | -- |
| 431.49 | 0.971 | 4.05 | -3.07 | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
| 575.46 | 1.12 | 3.95 | -- | 1.29 | -- | -- | -- | 0.461 | 12 | -- | -- | -- | -- |
| 572.94 | 1.11 | 3.96 | -- | -- | -1.48 | -- | -- | 0.516 | -- | -9.613 | 7 | 5.88 | -- |
| 679.52 | 1.22 | 3.97 | -- | -- | -- | -- | -- | 0.447 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 224.26 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 12 |
| 2 | 224.96 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 8 | 226.08 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 9 | 226.79 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 16 |
| 41 | 230.42 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 42 | 230.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 14 |
| 48 | 230.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 72 | 232.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 6 |
| 94 | 233.37 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 13 |
| 108 | 233.84 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 5 |
| 121 | 234.37 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 2 |
| 122 | 234.40 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 221 | 236.97 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 245 | 237.59 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 17 |
| 253 | 237.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 269 | 238.17 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 275 | 238.31 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 11 |
| 309 | 239.13 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 315 | 239.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 3 |