BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0393600 Os08g0393600|AK068190
         (115 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0393600  Protein tyrosine phosphatase-like protein, PTP...   191   8e-50
Os01g0150800  Protein tyrosine phosphatase-like protein, PTP...   123   3e-29
Os04g0271200  Silent information regulator protein Sir2 fami...    89   7e-19
Os01g0150200  Protein tyrosine phosphatase-like protein, PTP...    88   1e-18
Os01g0150500  Protein tyrosine phosphatase-like protein, PTP...    87   2e-18

>Os08g0393600 Protein tyrosine phosphatase-like protein, PTPLA family protein
          Length = 115

 Score =  191 bits (486), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 96/115 (83%), Positives = 96/115 (83%)

Query: 1   MLSHIDWWNRVSRSKPLATIPTXXXXXXXXAMAGNASVMRRLYLSFYNWIVFIGWVQVSW 60
           MLSHIDWWNRVSRSKPLATIPT        AMAGNASVMRRLYLSFYNWIVFIGWVQVSW
Sbjct: 1   MLSHIDWWNRVSRSKPLATIPTSSSISHISAMAGNASVMRRLYLSFYNWIVFIGWVQVSW 60

Query: 61  SMILALLENGYEAVYAAVEQHLLFAQTAAIMEILHSIVGEXXXXXXXXXXXNKGW 115
           SMILALLENGYEAVYAAVEQHLLFAQTAAIMEILHSIVGE           NKGW
Sbjct: 61  SMILALLENGYEAVYAAVEQHLLFAQTAAIMEILHSIVGEISSFFIKKIISNKGW 115



>Os01g0150800 Protein tyrosine phosphatase-like protein, PTPLA family protein
          Length = 225

 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/67 (92%), Positives = 63/67 (94%)

Query: 33 AGNASVMRRLYLSFYNWIVFIGWVQVSWSMILALLENGYEAVYAAVEQHLLFAQTAAIME 92
          AG ASV+RRLYLS YNWIVFIGWVQVSWSMILALLE  YEAVYAAVEQHLLFAQTAAIME
Sbjct: 6  AGMASVLRRLYLSVYNWIVFIGWVQVSWSMILALLEKRYEAVYAAVEQHLLFAQTAAIME 65

Query: 93 ILHSIVG 99
          ILHSIVG
Sbjct: 66 ILHSIVG 72



>Os04g0271200 Silent information regulator protein Sir2 family protein
          Length = 221

 Score = 89.0 bits (219), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 52/68 (76%)

Query: 32 MAGNASVMRRLYLSFYNWIVFIGWVQVSWSMILALLENGYEAVYAAVEQHLLFAQTAAIM 91
          MAG  S +RRLYLS YNW VF GW QV +  +  LLE+G+EAVYAAVE+ L FAQTAA +
Sbjct: 1  MAGVGSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHEAVYAAVERPLQFAQTAAFL 60

Query: 92 EILHSIVG 99
          EILH +VG
Sbjct: 61 EILHGLVG 68



>Os01g0150200 Protein tyrosine phosphatase-like protein, PTPLA family protein
          Length = 221

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 51/68 (75%)

Query: 32 MAGNASVMRRLYLSFYNWIVFIGWVQVSWSMILALLENGYEAVYAAVEQHLLFAQTAAIM 91
          M G  S +RRLYLS YNW VF GW QV +  +  LLE+G+EAVYAAVE+ L FAQTAA +
Sbjct: 1  MTGVGSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHEAVYAAVERPLQFAQTAAFL 60

Query: 92 EILHSIVG 99
          EILH +VG
Sbjct: 61 EILHGLVG 68



>Os01g0150500 Protein tyrosine phosphatase-like protein, PTPLA family protein
          Length = 234

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 51/63 (80%)

Query: 32 MAGNASVMRRLYLSFYNWIVFIGWVQVSWSMILALLENGYEAVYAAVEQHLLFAQTAAIM 91
          MA + S++RRLYLS YNW+ FIGW QV   M LALL+ G+EAVYAA+E+ LLF QTAAI+
Sbjct: 1  MAADGSMVRRLYLSIYNWVAFIGWAQVLCYMTLALLDKGHEAVYAAIERPLLFTQTAAIL 60

Query: 92 EIL 94
          E+L
Sbjct: 61 EVL 63



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.133    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,889,694
Number of extensions: 80005
Number of successful extensions: 142
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 6
Length of query: 115
Length of database: 17,035,801
Length adjustment: 82
Effective length of query: 33
Effective length of database: 12,754,253
Effective search space: 420890349
Effective search space used: 420890349
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)