BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0150500 Os01g0150500|Os01g0150500
(234 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0150500 Protein tyrosine phosphatase-like protein, PTP... 479 e-136
Os01g0150800 Protein tyrosine phosphatase-like protein, PTP... 331 3e-91
Os04g0271200 Silent information regulator protein Sir2 fami... 301 3e-82
Os01g0150200 Protein tyrosine phosphatase-like protein, PTP... 295 1e-80
Os08g0393600 Protein tyrosine phosphatase-like protein, PTP... 89 3e-18
Os05g0460800 Protein tyrosine phosphatase-like protein, PTP... 67 1e-11
>Os01g0150500 Protein tyrosine phosphatase-like protein, PTPLA family protein
Length = 234
Score = 479 bits (1234), Expect = e-136, Method: Compositional matrix adjust.
Identities = 234/234 (100%), Positives = 234/234 (100%)
Query: 1 MAADGSMVRRLYLSIYNWVAFIGWAQVLCYMTLALLDKGHEAVYAAIERPLLFTQTAAIL 60
MAADGSMVRRLYLSIYNWVAFIGWAQVLCYMTLALLDKGHEAVYAAIERPLLFTQTAAIL
Sbjct: 1 MAADGSMVRRLYLSIYNWVAFIGWAQVLCYMTLALLDKGHEAVYAAIERPLLFTQTAAIL 60
Query: 61 EVLVFPSSLPLFIRENWRLRGLVRSPVSSTLPQITGRLFITWGILWSFPETQSYIFVTSL 120
EVLVFPSSLPLFIRENWRLRGLVRSPVSSTLPQITGRLFITWGILWSFPETQSYIFVTSL
Sbjct: 61 EVLVFPSSLPLFIRENWRLRGLVRSPVSSTLPQITGRLFITWGILWSFPETQSYIFVTSL 120
Query: 121 LICWCIIEVTRYSFYGMKESFGFTPSWLLWLRYSTFIACFPVGVVSEICLAYTVLPFMKA 180
LICWCIIEVTRYSFYGMKESFGFTPSWLLWLRYSTFIACFPVGVVSEICLAYTVLPFMKA
Sbjct: 121 LICWCIIEVTRYSFYGMKESFGFTPSWLLWLRYSTFIACFPVGVVSEICLAYTVLPFMKA 180
Query: 181 SEKYCLRMPNKWNFSFNYFYANVFFMAFYVPVVPYLFHHMIAQRKKALSKAKTT 234
SEKYCLRMPNKWNFSFNYFYANVFFMAFYVPVVPYLFHHMIAQRKKALSKAKTT
Sbjct: 181 SEKYCLRMPNKWNFSFNYFYANVFFMAFYVPVVPYLFHHMIAQRKKALSKAKTT 234
>Os01g0150800 Protein tyrosine phosphatase-like protein, PTPLA family protein
Length = 225
Score = 331 bits (848), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 163/233 (69%), Positives = 187/233 (80%), Gaps = 13/233 (5%)
Query: 2 AADGSMVRRLYLSIYNWVAFIGWAQVLCYMTLALLDKGHEAVYAAIERPLLFTQTAAILE 61
A S++RRLYLS+YNW+ FIGW QV M LALL+K +EAVYAA+E+ LLF QTAAI+E
Sbjct: 6 AGMASVLRRLYLSVYNWIVFIGWVQVSWSMILALLEKRYEAVYAAVEQHLLFAQTAAIME 65
Query: 62 VLVFPSSLPLFIRENWRLRGLVRSPVSSTLPQITGRLFITWGILWSFPETQSYIFVTSLL 121
+L + GLVRSPVSSTLPQIT RLF+ WGIL SFPE ++IFVTSLL
Sbjct: 66 IL-------------HSIVGLVRSPVSSTLPQITARLFMIWGILRSFPEIHTHIFVTSLL 112
Query: 122 ICWCIIEVTRYSFYGMKESFGFTPSWLLWLRYSTFIACFPVGVVSEICLAYTVLPFMKAS 181
I WCI EVTRYSF GMKESFGFTPSWLLWLRYSTFI CFP+G+VSE+ L Y V+PFMKAS
Sbjct: 113 ISWCITEVTRYSFNGMKESFGFTPSWLLWLRYSTFIVCFPIGMVSEVGLVYIVVPFMKAS 172
Query: 182 EKYCLRMPNKWNFSFNYFYANVFFMAFYVPVVPYLFHHMIAQRKKALSKAKTT 234
EKYCLRMPNKWNFS YFYA+VFFMA Y PV P+LFH++I QRKKAL+K+KTT
Sbjct: 173 EKYCLRMPNKWNFSIKYFYASVFFMALYAPVYPHLFHYLIVQRKKALAKSKTT 225
>Os04g0271200 Silent information regulator protein Sir2 family protein
Length = 221
Score = 301 bits (771), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 145/224 (64%), Positives = 170/224 (75%), Gaps = 13/224 (5%)
Query: 1 MAADGSMVRRLYLSIYNWVAFIGWAQVLCYMTLALLDKGHEAVYAAIERPLLFTQTAAIL 60
MA GS VRRLYLS+YNW F GWAQVL Y LL+ GHEAVYAA+ERPL F QTAA L
Sbjct: 1 MAGVGSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHEAVYAAVERPLQFAQTAAFL 60
Query: 61 EVLVFPSSLPLFIRENWRLRGLVRSPVSSTLPQITGRLFITWGILWSFPETQSYIFVTSL 120
E+L L GLVRSPVS+TLPQI RLF+TWGILWSFPET S+I VTSL
Sbjct: 61 EILH-------------GLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSL 107
Query: 121 LICWCIIEVTRYSFYGMKESFGFTPSWLLWLRYSTFIACFPVGVVSEICLAYTVLPFMKA 180
+I W I E+ RYSF+GMKE+FGF PSWLLWLRYSTF+ +P G+ SE+ L Y LP+MKA
Sbjct: 108 VISWSITEIIRYSFFGMKEAFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKA 167
Query: 181 SEKYCLRMPNKWNFSFNYFYANVFFMAFYVPVVPYLFHHMIAQR 224
SEKYCLRMPNKWNFSF++FYA++ +A YVP P++F +M+AQR
Sbjct: 168 SEKYCLRMPNKWNFSFDFFYASILSLAIYVPGSPHMFTYMLAQR 211
>Os01g0150200 Protein tyrosine phosphatase-like protein, PTPLA family protein
Length = 221
Score = 295 bits (756), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 142/224 (63%), Positives = 168/224 (75%), Gaps = 13/224 (5%)
Query: 1 MAADGSMVRRLYLSIYNWVAFIGWAQVLCYMTLALLDKGHEAVYAAIERPLLFTQTAAIL 60
M GS VRRLYLS+YNW F GWAQVL Y LL+ GHEAVYAA+ERPL F QTAA L
Sbjct: 1 MTGVGSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHEAVYAAVERPLQFAQTAAFL 60
Query: 61 EVLVFPSSLPLFIRENWRLRGLVRSPVSSTLPQITGRLFITWGILWSFPETQSYIFVTSL 120
E+L L GLVRSPVS+TLPQI RLF+TWGILWSFPET S+I VTSL
Sbjct: 61 EILH-------------GLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSL 107
Query: 121 LICWCIIEVTRYSFYGMKESFGFTPSWLLWLRYSTFIACFPVGVVSEICLAYTVLPFMKA 180
+I W I E+ RYSF+GMKE+FGF PSWLLWLRYSTF+ +P G+ SE+ L Y LP+MKA
Sbjct: 108 VISWSITEIIRYSFFGMKETFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKA 167
Query: 181 SEKYCLRMPNKWNFSFNYFYANVFFMAFYVPVVPYLFHHMIAQR 224
+EKYCLRMPNKWNFSF++ YA++ +A YVP P++F +M+AQR
Sbjct: 168 TEKYCLRMPNKWNFSFDFSYASILSLAVYVPGSPHMFTYMLAQR 211
>Os08g0393600 Protein tyrosine phosphatase-like protein, PTPLA family protein
Length = 115
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 51/63 (80%)
Query: 1 MAADGSMVRRLYLSIYNWVAFIGWAQVLCYMTLALLDKGHEAVYAAIERPLLFTQTAAIL 60
MA + S++RRLYLS YNW+ FIGW QV M LALL+ G+EAVYAA+E+ LLF QTAAI+
Sbjct: 32 MAGNASVMRRLYLSFYNWIVFIGWVQVSWSMILALLENGYEAVYAAVEQHLLFAQTAAIM 91
Query: 61 EVL 63
E+L
Sbjct: 92 EIL 94
>Os05g0460800 Protein tyrosine phosphatase-like protein, PTPLA family protein
Length = 219
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 96/224 (42%), Gaps = 19/224 (8%)
Query: 10 RLYLSIYNWVAFIGWAQVLCYMTLALLDKGH-EAVYAAIERPLLFTQTAAILEVLVFPSS 68
+LYL YN V +GW L + L + YA + QT AILE +
Sbjct: 6 QLYLLSYNSVQALGWFVALLRLLPCLAPPSSVHSSYAVAGDLVCLLQTWAILETI----- 60
Query: 69 LPLFIRENWRLRGLVRSPVSSTLPQITGRLFITWGILWSFPETQSYIFVTSLLICWCIIE 128
GLV + Q GR ++ PE QS V + W I E
Sbjct: 61 --------HAAIGLVHTSPLLAFLQWGGRTHFVLAVVRQIPEVQSSPSVFITFMAWSISE 112
Query: 129 VTRYSFYGMKESFGFTPSWLLWLRYSTFIACFPVGV-VSEICLAYTVLPFMKASEKYCLR 187
V RYS Y + + P WL +LRY+ FI +P+GV E+ Y LPF+K + Y
Sbjct: 113 VIRYSHYAL-TTLKVCPPWLTYLRYTAFIPLYPIGVGPGEMWTMYQALPFVKERKLYS-G 170
Query: 188 MPNKWNFSFNYFYANVFFMAFYVPVVPYLFHHMIAQRKKALSKA 231
K++ S++ F V +A Y + L+ H+ QR+ L K+
Sbjct: 171 FFGKFSMSYHSFLVAV--LAVYPFLWMKLYLHVFKQRRSKLGKS 212
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.331 0.141 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,639,532
Number of extensions: 295308
Number of successful extensions: 617
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 612
Number of HSP's successfully gapped: 6
Length of query: 234
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 136
Effective length of database: 11,918,829
Effective search space: 1620960744
Effective search space used: 1620960744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 154 (63.9 bits)